Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g1628 ATGGATGCTGAAGACGAGGAAGCTCAACACCTACAACACTCTTATCCACTCCCATACCTCTCTACCACTTCACCACAATGCCACAGCACTGGAGTGGAGCCGGTTGATGCGGCCACCACCGCCGATAATAGAGAAACTCTTGTTGGAGAAGCGGAACAGGCGGCGGTTGCAGCCAATTCGGGCGAAGCGGTTGAAGAGGCGGTGGAGGAGACAGAGATTGGGAATTTGGGAAACGCAGGAGAAGGAGAAATGCAAGTGGTGGAAGATAAGGTTGTTGGCCCTGAGGTTACAAAGGGTGATGATGTGGAGAATGGACAGGGCCAACAAGAAGAGGATGAGATTATGGTGGAGGCAACCGGCGTGGCGAAGATGGAAAAGGAGGAAGCTCCGTTGGTAGCTGAGCACGAAATCAGGGATGGTGAGGATAACGTGGTGGAGCAGACGGAGGTACCAAATGAAGCTGCTTCCGTGGTAGAAAGAGAACAAGGGCAAGAAAAAGAAGATGCAGAAGAAGAACAGGAGGAGGAGGAGGAGGAGGAGGAGGTGGAGAAGGAGGCGGGTGGGGAGCAAGAAGCTGATGCTGCTAGCGGTATGGCAAATGAAGCTGCTTTATTGGAAGAAGACGAGCAAGTACTAGGACAGCAGCACGAGAATGCAGGCGCCGATGTTGTTGTTGGTGGTGTAGCTAATGAAGCTACTTTCATCAAAGTGAACGAAGGAGGACAACAACAACAACATCAAGAGGAACAAGAGGATGCTGATGTTGGTGGTGGCTTGTCAAATGAAACTGCTTTCATGGAAGAGCAAGAAGCAGCAGAGAAACAAGGAGAAGATGAGGAAGAAGAACAAGCTGCTGCCAGTGATGATATAGGAAATGAAGCTGCTTTGACAGTAGATCAGGAAGAAGAACAAGCCGATGCTGGTGGTGATATGACAAATGAAGCTGCTTTCACGGATGAACATGAAGAAGAAGAAGAAGAAGAAGAGGAAGAAGATGGCGGTGGCAGTGTTGGGCGCATGGGAGAAGAGACAGAGCCCACTSAAGRGACAGAAGAAACGGAGGAGCAGAGTAGAAGTGTGAGTGGTGGGAAGAGGAAGCGCGGAAGTGGGAAAAATTCAAAGTCCACAGGGAGAGCCCCATCAAGGAAAAAGATGGAAGAGGATGTTTGTTTCATTTGCTTCGACGGGGGTGAGCTTGTTCTTTGTGACCGCAGGGGGTGCCCAAAGGCTTACCATCCTTCTTGCGTTAATCGTGATGAGGCCTTCTTCCGATCCAAGGGTAAATGGAATTGTGGATGGCATATTTGCAGCAACTGTGAGAAGAATGCTTACTACATGTGTTATACATGTACGTTCTCTTTGTGCAAGGGATGCATCAAAGATGCTGTTATCTTATGTGTTAGGGGAAACAAGGGCTTTTGCGAGACATGCATGAGAACTGTAATGTTGATTGAACAGAACAATCATGAAAACATGGGACAAGTGGATTTTGATGACAGAAGCAGCTGGGAGTATCTCTTTAAGGACTATTACTTAGATCTAAAAGAAAAGCTATCYCTGACATTCGATGAACTCACACAAGCTAAAAATCCTTGGAAGGGATCTGATAGGCTTCCTTCTAAAGAGGAATCAGCAGATGAACTTTTYGATGCCAATAATGATAGAGGATCTGATTCAGATAGCTCATATGAGAATGTAGATTTGAGTCGTTCCAAAAGAAGAAAGGGCAAGAAGCGGACAAAGTCCCGTTCCAGGGAAGGGACTTCATATGCTTCTGTGGATGGAGCATCTGCAGATGAAASCTCTGAGTGGGCTTCAAAAGAACTTTTGGAGTTTGTCATGCACATGAGAAATGGRGACAGATCCATTTTGTCACAGTTTGATGTGCAGGCTCTTCTGTTAGAGTATATTAAAAGAAATAAACTTAGAGATCCTCGTAGAAAAAGTCAAATCATTTGTGATACAAGGCTTCAAAATTTGTTTGGTAAACCAAGAGTGGGACATTTTGAAATGTTAAAGCTTCTTGAATCCCATTTCCTTCTAAAAGAAGATTCTCAAACTGATGATATGCAGGGAAGTGTTCTTGATACTGAAATTAGTCATTTGGAAGGTGATGGCAACTCTGATTCATATGTGAAAGCTGGCAAAGATAAGAGACGTAAAACTCGCAAAAAAGGTGATGAAAGAGGACTTCAAACYAATGTGGATGATTATGCTGCTATTGATAATCATAATGTTAATTTAATATATCTCCGACGTAATTTGGTGGAAGAGCTACTTGAAGATACAGAAAAGTTTCATGATAGAGTTGTTGGCGCTTTTGTGAGAATAAGGATTTCGGGTAGTGGCCAGAAGCAAGACTTGTACAGGCTGGTTCAGGTTGTAGGGACTTGCAAAGCATCAGAACCATATAAAGTTGGTAAAAGGATGACAGATTTCTTGCTAGAAATCTTAAATTTAAACAAGACAGAGATTGTATCCATTGATATTATCTCAAATCAGGAGTTCACAGAGGATGAATGCAAGCGACTCCGCCAAAGCATAAAATGCGGGCTCATAAATCGTCTGACACTGGGTGACATTCAGGAAAAAGCWTTGGCACTTCAGGCAGTTAGAGTGAATGATTGGTTAGAAACAGAGATAGTGCGGTTAAGTCATCTCCGTGACAGAGCCAGTGAGAAGGGACGCAGAAAAGAGCTCAGAGAGTGTGTTGAGAAGTTGCAACTTCTGAAGACTCCCGAAGAACGACAACGCAGATTGGAGGAAATTCCAGAAATTCAYGTGGATCCTAAAATGGATCCAAGTCATGARTCTGAAGAAGATGAAGATGAAATGGATGAAAAACGACAAGAAAACTACATGAGACCTAGAGGACCTGCTGCATTTGGAAGGAGGGGGAGAGAGATTATTTCTCCTAGGAGTGGTCCTATTTCGAGTGATTCCTGGAGTGCGACACGGAATTATTCTARTGTGAATCGYGAACTTAGYAGAAATCTGTCKAACAAGGGGTTTTCAAGCAAAGGCGATGATGTTTCTATTGCTAATGAAGTACTAAATGATGCTCAATTACCCCAGGGAAGGGATTGGGGTTCACAATCTAGTGGCCTGGAGAGGCAGAAGCTATCTTCAAGCTTTGAAAGTGGTACTAAAAGTAACCAGCTGTTATCAACACCTGATYRTTTTTCTGCTGCTTTATCAGAAACTTCTGCAGTGTTGTCTTCTGTGGGAGCWGSTCYGCCAGCTATGAAAATAAATGAAAGTGAAAAAATGTGGCATTATCAGGATCCGTCTGGAAAAGTTCAGGGACCATTTTCTATGGTGCAGCTACGCAAATGGAGTAACACAGGGTACTTTCCTGCTGATTTGAGGATTTGGAAAGCCAGTGACAAGCAAGATCAGTCGATGCTCTTAACCGATGCCTTAGCAGGAAAATTTCCTACTGAACCATCAATGCTGGATAAAACTCCTGCTAAGGCTCAATCTGTGATTGATCCACATTACTCATCTTCATACTCTGGCAAGTCTCATTTGGCGGTACAAGCTATGGAAGGTCAAGCTGGAGGAAGACCATCATTTGATCATAATAGTGGATCACATAATCCTCTTKGTTCTCCTGGACAAAATGCTGGAGGAAGTTGGAGATCTAAAGATACCATGAATTCTTTAGCAAGTCGACCTTCATTGGCAGTTGAAGTTCCCAAGAATCTGGCAAATGGTTGGGGTTCTGATGCTGGACTCRGAAATGAAGCAACAAATCTTCCTTCACCTACACCCCAGACTGCTTCAGGTGGGACYAAGATGCAGGCTTTTGAAAATAAATGGTCTCCAACTCCAACCCCTGTCCTATTGGCTGGCTCTCTCTTAGGAAATTCACTCCCTGTTGGGCCTGAAAGTCGTTCAAGTTCACAACCTGGAATGATATCAGCTTCTAAATCAGATAATAATCAAGTACATGTTCATGCAGCRTTACCTGCGATTGCTTCRGGTGTTGACATTCAGACAGCAGGTGTACACTTGCAAAGTCAGAGTGTCAGTAACCATACCTCCCGTKCCGAAGGCCATCAAGGRTGGGGCTCYGGTACGGYTCCAAAGCCTGAAGTACAGACGTGGGGAGGTGCTCAACCTCAAAGGATAGAACCAAATAATCCAGTTACTATGCCTGCACAGCCAGCTTCCCATGGTCACTGGGTTGATACTACATCCGTCCAGAACTCTGCCTCATATAGCAATGGAAATCCTAATGGGGCCTTCTCTACACCGAGCTTTCCAGGCATGACTACACCTACACCTACACCTACACCTACACCTACACCTGAACCATGGAGACCGCCAAGTTCAAATAGTCAGTCAAACATAGCAGCAGCAGCACCATCCAATGTACCTTATGCTGGTTGGGGTATGCCAGGAAATCAGAATATTAACTGGAGTGGACCTYTACCTGCAAATGTGAACGTAAACTGGATGCCTGGACAGGGGCCAGGACCCAGTAATGCAACTCCAGTATGGGGTGCTCCTAGCCAGGGACCACCTGCGGCAAATGCTGTTGGCTGGGTTGCACCTGGTCAAGGACGTTCGCATGTAAATGCAAATGCAGGTTTGGTTGCACCTGGTCAAGGGCCAACGGTGGGAAGTACTAATCCTGGTTGGGGTTCTTCATCTGGAAATCCAGGCACATGGGGTGGCGAGCAAAGTCGCAATGGGGATAGATTCCACAGCCAGGGCGATCGTGGAACACATGGTGGAGATTCTGGTTATGGAGGTAAATCCTGGAACAGACAATCATCATTTAATGGCAGCGGAAGAGGAGGTTCTTCCAGGCCTCCTGTTGGGGGACAAAGAGGAGTATGTAAGTTCCACGAGAGTGGACATTGCAAGAAGGGGGCCTCCTGTGATTTTATGCACACTTAA 4908 0.4511 MDAEDEEAQHLQHSYPLPYLSTTSPQCHSTGVEPVDAATTADNRETLVGEAEQAAVAANSGEAVEEAVEETEIGNLGNAGEGEMQVVEDKVVGPEVTKGDDVENGQGQQEEDEIMVEATGVAKMEKEEAPLVAEHEIRDGEDNVVEQTEVPNEAASVVEREQGQEKEDAEEEQEEEEEEEEVEKEAGGEQEADAASGMANEAALLEEDEQVLGQQHENAGADVVVGGVANEATFIKVNEGGQQQQHQEEQEDADVGGGLSNETAFMEEQEAAEKQGEDEEEEQAAASDDIGNEAALTVDQEEEQADAGGDMTNEAAFTDEHEEEEEEEEEEDGGGSVGRMGEETEPTXXTEETEEQSRSVSGGKRKRGSGKNSKSTGRAPSRKKMEEDVCFICFDGGELVLCDRRGCPKAYHPSCVNRDEAFFRSKGKWNCGWHICSNCEKNAYYMCYTCTFSLCKGCIKDAVILCVRGNKGFCETCMRTVMLIEQNNHENMGQVDFDDRSSWEYLFKDYYLDLKEKLSLTFDELTQAKNPWKGSDRLPSKEESADELFDANNDRGSDSDSSYENVDLSRSKRRKGKKRTKSRSREGTSYASVDGASADEXSEWASKELLEFVMHMRNGDRSILSQFDVQALLLEYIKRNKLRDPRRKSQIICDTRLQNLFGKPRVGHFEMLKLLESHFLLKEDSQTDDMQGSVLDTEISHLEGDGNSDSYVKAGKDKRRKTRKKGDERGLQTNVDDYAAIDNHNVNLIYLRRNLVEELLEDTEKFHDRVVGAFVRIRISGSGQKQDLYRLVQVVGTCKASEPYKVGKRMTDFLLEILNLNKTEIVSIDIISNQEFTEDECKRLRQSIKCGLINRLTLGDIQEKALALQAVRVNDWLETEIVRLSHLRDRASEKGRRKELRECVEKLQLLKTPEERQRRLEEIPEIHVDPKMDPSHESEEDEDEMDEKRQENYMRPRGPAAFGRRGREIISPRSGPISSDSWSATRNYSXVNRELSRNLSNKGFSSKGDDVSIANEVLNDAQLPQGRDWGSQSSGLERQKLSSSFESGTKSNQLLSTPDXFSAALSETSAVLSSVGAXXPAMKINESEKMWHYQDPSGKVQGPFSMVQLRKWSNTGYFPADLRIWKASDKQDQSMLLTDALAGKFPTEPSMLDKTPAKAQSVIDPHYSSSYSGKSHLAVQAMEGQAGGRPSFDHNSGSHNPLXSPGQNAGGSWRSKDTMNSLASRPSLAVEVPKNLANGWGSDAGLXNEATNLPSPTPQTASGGTKMQAFENKWSPTPTPVLLAGSLLGNSLPVGPESRSSSQPGMISASKSDNNQVHVHAALPAIASGVDIQTAGVHLQSQSVSNHTSRXEGHQGWGSGTXPKPEVQTWGGAQPQRIEPNNPVTMPAQPASHGHWVDTTSVQNSASYSNGNPNGAFSTPSFPGMTTPTPTPTPTPTPEPWRPPSSNSQSNIAAAAPSNVPYAGWGMPGNQNINWSGPLPANVNVNWMPGQGPGPSNATPVWGAPSQGPPAANAVGWVAPGQGRSHVNANAGLVAPGQGPTVGSTNPGWGSSSGNPGTWGGEQSRNGDRFHSQGDRGTHGGDSGYGGKSWNRQSSFNGSGRGGSSRPPVGGQRGVCKFHESGHCKKGASCDFMHT* 1636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g1628 1635 MobiDBLite consensus disorder prediction 535 554 - -
Amo17g1628 1635 Gene3D SWIB/MDM2 domain 593 689 IPR036885 -
Amo17g1628 1635 MobiDBLite consensus disorder prediction 1 37 - -
Amo17g1628 1635 Gene3D - 1089 1148 IPR035445 -
Amo17g1628 1635 SUPERFAMILY FYVE/PHD zinc finger 386 439 IPR011011 -
Amo17g1628 1635 MobiDBLite consensus disorder prediction 1539 1567 - -
Amo17g1628 1635 MobiDBLite consensus disorder prediction 915 983 - -
Amo17g1628 1635 MobiDBLite consensus disorder prediction 73 379 - -
Amo17g1628 1635 ProSiteProfiles SWIB/MDM2 domain profile. 598 681 IPR003121 -
Amo17g1628 1635 MobiDBLite consensus disorder prediction 15 30 - -
Amo17g1628 1635 Gene3D - 742 870 IPR036128 GO:0003677
Amo17g1628 1635 MobiDBLite consensus disorder prediction 1293 1311 - -
Amo17g1628 1635 ProSitePatterns Zinc finger PHD-type signature. 390 450 IPR019786 -
Amo17g1628 1635 MobiDBLite consensus disorder prediction 692 729 - -
Amo17g1628 1635 MobiDBLite consensus disorder prediction 915 935 - -
Amo17g1628 1635 CDD Bbox1 435 461 - -
Amo17g1628 1635 MobiDBLite consensus disorder prediction 1374 1424 - -
Amo17g1628 1635 ProSiteProfiles GYF domain profile. 1088 1142 IPR003169 GO:0005515
Amo17g1628 1635 SMART gyf_5 1089 1144 IPR003169 GO:0005515
Amo17g1628 1635 MobiDBLite consensus disorder prediction 272 287 - -
Amo17g1628 1635 MobiDBLite consensus disorder prediction 116 145 - -
Amo17g1628 1635 MobiDBLite consensus disorder prediction 1162 1176 - -
Amo17g1628 1635 MobiDBLite consensus disorder prediction 1291 1311 - -
Amo17g1628 1635 Pfam SWIB/MDM2 domain 606 679 IPR003121 -
Amo17g1628 1635 MobiDBLite consensus disorder prediction 1425 1443 - -
Amo17g1628 1635 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 376 481 IPR013083 -
Amo17g1628 1635 MobiDBLite consensus disorder prediction 1025 1053 - -
Amo17g1628 1635 Pfam GYF domain 1091 1132 IPR003169 GO:0005515
Amo17g1628 1635 CDD PHD5_NSD 389 434 - -
Amo17g1628 1635 SMART PHD_3 389 435 IPR001965 -
Amo17g1628 1635 MobiDBLite consensus disorder prediction 1343 1471 - -
Amo17g1628 1635 ProSiteProfiles Zinc finger PHD-type profile. 387 453 IPR019787 -
Amo17g1628 1635 Coils Coil 155 192 - -
Amo17g1628 1635 MobiDBLite consensus disorder prediction 1248 1274 - -
Amo17g1628 1635 MobiDBLite consensus disorder prediction 1145 1219 - -
Amo17g1628 1635 MobiDBLite consensus disorder prediction 1191 1219 - -
Amo17g1628 1635 SMART rtf1 740 850 IPR004343 GO:0003677
Amo17g1628 1635 SUPERFAMILY SWIB/MDM2 domain 603 680 IPR036885 -
Amo17g1628 1635 SMART swib_2 606 684 IPR019835 -
Amo17g1628 1635 SUPERFAMILY GYF domain 1082 1141 IPR035445 -
Amo17g1628 1635 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 19 224 1635 - -
Amo17g1628 1635 MobiDBLite consensus disorder prediction 317 333 - -
Amo17g1628 1635 CDD SWIB-MDM2_like 604 679 - -
Amo17g1628 1635 MobiDBLite consensus disorder prediction 533 593 - -
Amo17g1628 1635 MobiDBLite consensus disorder prediction 1238 1274 - -
Amo17g1628 1635 Pfam Plus-3 domain 745 848 IPR004343 GO:0003677
Amo17g1628 1635 MobiDBLite consensus disorder prediction 165 187 - -
Amo17g1628 1635 CDD GYF 1088 1143 IPR003169 GO:0005515
Amo17g1628 1635 MobiDBLite consensus disorder prediction 1016 1053 - -
Amo17g1628 1635 SUPERFAMILY Plus3-like 741 870 IPR036128 GO:0003677
Amo17g1628 1635 ProSiteProfiles Zinc finger C3H1-type profile. 1610 1635 IPR000571 GO:0046872
Amo17g1628 1635 PANTHER UNCHARACTERIZED 224 1635 - -
Amo17g1628 1635 MobiDBLite consensus disorder prediction 1587 1602 - -
Amo17g1628 1635 ProSiteProfiles Plus3 domain profile. 740 873 IPR004343 GO:0003677
Amo17g1628 1635 MobiDBLite consensus disorder prediction 1486 1618 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g1628 Amo-Chr17 67209963 67220436 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g1628 387 474 PHD Transcription Factor Family AT5G36670 34.000 1.46e-06 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Amo17g1628 Plus-3 6.7e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g1628 - - aip:107608758 2918.26