Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g1610 ATGCCAACGGCAACAAACAGTATTGAAAAAGAAGAAGAAGAAACAGGGATAAAGGGGGATCAAAGTTCAACGAAGTGCCAAGACTGTGGGAACCAAGCGAAGAAGGAGTGCTCATATTGGAGGTGCAGAACATGCTGCAAGAACAAAGGATTCCATTGTCAAACCCATATCAAGAGCACTTGGGTCCCCGTTGACCGAAGGCGCCACAGGGAAGTAAATAACCACTTTCAGTTGCACCACCCACATATCTCCAAAAAGCACAAGCACTTCTACTCACCATCACCAGGTGTAGAGGACAAGTTAAAGTTGCCATCTGCTACGAATTCCATGGCTATATTTCGGCGCGTTGAGGTTAGGTCAATGGATCATGCGGTTAACGAAATTGGCTATCAAACATGTGTCAACATTGGAGGACATGTATTTAGTGGTCTTCTGTATGATCATGGCCCTGCTGCTCCTTTTCTGGATCATCATCATCAACAGAATCTCAATCATGGTGCAAGTATGGGTCCAGTTGATGATGTTGATGAACCTTTCTTGCCTCCACCACCACTATCAGACCCGCTACGTACGCCCTACTTCTCATTTCCAAAACCATAG 600 0.455 MPTATNSIEKEEEETGIKGDQSSTKCQDCGNQAKKECSYWRCRTCCKNKGFHCQTHIKSTWVPVDRRRHREVNNHFQLHHPHISKKHKHFYSPSPGVEDKLKLPSATNSMAIFRRVEVRSMDHAVNEIGYQTCVNIGGHVFSGLLYDHGPAAPFLDHHHQQNLNHGASMGPVDDVDEPFLPPPPLSDPLRTPYFSFPKP* 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g1610 199 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 103 150 IPR006511 -
Amo17g1610 199 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 25 67 IPR006510 -
Amo17g1610 199 MobiDBLite consensus disorder prediction 162 199 - -
Amo17g1610 199 Pfam Domain of unknown function (DUF702) 23 151 - -
Amo17g1610 199 MobiDBLite consensus disorder prediction 176 190 - -
Amo17g1610 199 PANTHER BNAC01G23660D PROTEIN 19 156 - -
Amo17g1610 199 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 19 156 IPR007818 GO:0003700|GO:0006355
Amo17g1610 199 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g1610 Amo-Chr17 64618907 64619802 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g1610 25 195 C2H2 Transcription Factor Family AT2G21400 42.373 1.91e-41 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Amo17g1610 DUF702 6.3e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g1610 - - aip:110269564 190.274