Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g1607 ATGATCTTCTCTAGCGCTGCTCTGGTGACGATCTTCTCAGTGGCGTTCTCCGATGAATCGATGCTTTCAGTTTTTAGTTTCTTCTGGCTGTTCCTTGAGCTGGTTTTGACTGAGAGCGATGGGGAGAGGAAGATCGCGATAAGGAGGATCGACAATTCCACGAGCAGGCAAGTGACGTTCTCGAAGCAAAGGAACGGTTTGTTGAAGAAGGCGAAGGAGCTTGCGATTTTGTGCGATGCTGAGGTTCGAGTTATGATCTCTTCCATCACTAACTCTATGATTTCTCCGGTTCCAGATTGGAACTGTATGGGTGCAGTTGACTGCATTGACTGTGCTACTAATGCATCAGTGGTTAGCGCTCTGAACGAAGGAATTTTAGCTGCAACAGAAATGGCAGGTCTTCAGAAAAAGCCTTGGGTTATGATCAATGTCAATGATGATAAAGATCTTCATATTCGCAAAGCCGAATTTGATCCAGAAGACTGTCCAGCAAATTGTTCTCGCCCTTGCAAAATTGTGTGCCCTGCTAATGCAATATCATTCCTAGGGAAATCAGCATCTGGAACTTCATTTAATACGGAATTACCCAAAGTGTTAATGGATGGAGTCATAACAGAACGCTGCTATGGTTGTGGCCGTTGCCTTCCGGTTTGCCCCTATGACAAAATAATGGGTGCTAATTTTCCAGAAAGTGCAGCCGGAGAGCATCGAGTTCAAGAACATCGAGAAAATGAAGAGCAAGGCATGCGTAATATTCTGAATGACTATATTCTTATCTACAGAAGAATGGGGGTAGAGGCAGAGAAACTGCATATTATTGATAAGGATTGCATTGAAAAAGGAATTGTAGAACTTATCTGCAAGCATAATATCAAGAAGCTTGTGATGGGAGCAGCTTCTAATAAGTACCATTCTAGTTCATTTGCAAAGGATACCTTATACACACAAGGCACAAGGGATGCAGGTTTGATTTGA 975 0.4308 MIFSSAALVTIFSVAFSDESMLSVFSFFWLFLELVLTESDGERKIAIRRIDNSTSRQVTFSKQRNGLLKKAKELAILCDAEVRVMISSITNSMISPVPDWNCMGAVDCIDCATNASVVSALNEGILAATEMAGLQKKPWVMINVNDDKDLHIRKAEFDPEDCPANCSRPCKIVCPANAISFLGKSASGTSFNTELPKVLMDGVITERCYGCGRCLPVCPYDKIMGANFPESAAGEHRVQEHRENEEQGMRNILNDYILIYRRMGVEAEKLHIIDKDCIEKGIVELICKHNIKKLVMGAASNKYHSSSFAKDTLYTQGTRDAGLI* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g1607 324 SUPERFAMILY 4Fe-4S ferredoxins 149 230 - -
Amo17g1607 324 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 153 184 IPR017896 -
Amo17g1607 324 SMART madsneu2 40 99 IPR002100 GO:0003677|GO:0046983
Amo17g1607 324 Gene3D - 117 241 - -
Amo17g1607 324 Gene3D - 52 96 IPR036879 GO:0003677|GO:0046983
Amo17g1607 324 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 196 228 IPR017896 -
Amo17g1607 324 PANTHER PHOTOSYSTEM I IRON-SULFUR CENTER-RELATED 103 235 - -
Amo17g1607 324 ProSiteProfiles MADS-box domain profile. 40 93 IPR002100 GO:0003677|GO:0046983
Amo17g1607 324 ProSitePatterns 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 208 219 IPR017900 -
Amo17g1607 324 PANTHER PHOTOSYSTEM I IRON-SULFUR CENTER 103 235 - -
Amo17g1607 324 PRINTS MADS domain signature 42 62 IPR002100 GO:0003677|GO:0046983
Amo17g1607 324 PRINTS MADS domain signature 77 98 IPR002100 GO:0003677|GO:0046983
Amo17g1607 324 PRINTS MADS domain signature 62 77 IPR002100 GO:0003677|GO:0046983
Amo17g1607 324 SUPERFAMILY SRF-like 41 98 IPR036879 GO:0003677|GO:0046983
Amo17g1607 324 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 49 92 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g1607 Amo-Chr17 64229633 64231959 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g1607 41 93 MADS-box Gene Family AT2G14210 75.472 2.81e-17 78.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Amo17g1607 SRF-TF 3.3e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g1607 - - aip:110264240 473.011