Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g1599 ATGTCCATAAACGAGGATGATGTGAAAAATGATTTTGATAATGATTTGGGTGATGATTTCGATTATCAATCGAATGCAGAAGATGATGCTGAAGACGACGATGTGGATTCGCTGGATTCTACTAGCAAGAGTGAAGAAGTTTGTGGTGTAAAAAGAATAGTAGATTTAATGGTGGAGGATATTTGGAACCTGGAGTTTAGGACAGAGGATGAGGCGTGCCAATTTTATAACACTTATTCTTGTTGGCATGGATTTGTAATGAGGAAGGACGACGTGGTTAGGGATAATCAAGGTAGAATCATTAGTAGGCAACTTGTTTGCAACAAAGAGGGCTCGAGGAATATGAGGTATCTTGATCTGGATGATAGATCAAGGGAGGCAAGATTTTATGTTAATCGCAAGAACACCCTCATTGACTTCATGCATAACCTGGATAAGGCCTTAAAGGAGTATAGAAACAACAAATTAATAGCTAACTTTAAGTCTCAGTGCTCAGAGCCAGTGATAATTATCTCGTTGGAGGTATATGAAAGATCTGCATCATGTTATTTCACTCGAAACATTTTTAAAGAAATTCGTAATGAGATTCAGAGGGCAGGGGCTTTGAATATCAAGGTACTAAGCACAACCTTGGACAAGGTCAAGTTCAGTGTGACTGCTCTCGGAGACCCGGCCAAAGATCGATGGGTGGAAGTCGATAGAGGTAAGAATCTGTTCTCGTGCTCGTGCAAGCTGTTTGAATCATGTGGTATTCCCTGTAGTCATGTCTTCTGTGCCATGAAGTTCGAAAACATACTTGAGTTTCCAGATTCGTTGATCTACAAAAGGTGGACAAAGAATTGTGATATTGCTTGCAAGGATCTTGCAGACTTTGATGAAGTCCAGTCTGAACTTGTCAATTTAGTTATCCCCCTGCAGTCACGCAAACAAGGCAACTCAACTCCTAATGTTAACGTGGAAGGCAACAACGATCCCTTTGTTGTCAAAAGCAAAGGAGCCCCTTCCAAGAGGTCTTCTTGGAGGAAGAAGAGAGCATGCTCTAATTGCCACAAGTACGGTCATTACTACAAGCGTTGTCCAGATCTGATGCCGCATAGTGTGGAAGGTAACCCTCGCGATCAATCAGACGGCAATGCATCAGCCAAGGAGTCAGGTTTTAGTCCAAAAAGGTTTGCTAATTCTTTGAGGTCGTTCTCAGTTAAGTCCGAACACCACTTAGGACCTAAGACCAAGGCTTTTAAAAAGGGTGGAACAAGGAAGTTTACGGTGACGGGTATAAGGAACCGGAAGGGTAAAGACAACACGTTTGATGAGGTGAAGGAGTCACAGTAG 1332 0.4219 MSINEDDVKNDFDNDLGDDFDYQSNAEDDAEDDDVDSLDSTSKSEEVCGVKRIVDLMVEDIWNLEFRTEDEACQFYNTYSCWHGFVMRKDDVVRDNQGRIISRQLVCNKEGSRNMRYLDLDDRSREARFYVNRKNTLIDFMHNLDKALKEYRNNKLIANFKSQCSEPVIIISLEVYERSASCYFTRNIFKEIRNEIQRAGALNIKVLSTTLDKVKFSVTALGDPAKDRWVEVDRGKNLFSCSCKLFESCGIPCSHVFCAMKFENILEFPDSLIYKRWTKNCDIACKDLADFDEVQSELVNLVIPLQSRKQGNSTPNVNVEGNNDPFVVKSKGAPSKRSSWRKKRACSNCHKYGHYYKRCPDLMPHSVEGNPRDQSDGNASAKESGFSPKRFANSLRSFSVKSEHHLGPKTKAFKKGGTRKFTVTGIRNRKGKDNTFDEVKESQ* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g1599 443 PANTHER OS03G0181600 PROTEIN 57 121 - -
Amo17g1599 443 PANTHER OS03G0181600 PROTEIN 134 284 - -
Amo17g1599 443 SMART 26again6 239 266 IPR006564 GO:0008270
Amo17g1599 443 MobiDBLite consensus disorder prediction 1 42 - -
Amo17g1599 443 ProSiteProfiles Zinc finger CCHC-type profile. 346 361 IPR001878 GO:0003676|GO:0008270
Amo17g1599 443 SUPERFAMILY Retrovirus zinc finger-like domains 332 364 IPR036875 GO:0003676|GO:0008270
Amo17g1599 443 ProSiteProfiles Zinc finger SWIM-type profile. 228 264 IPR007527 GO:0008270
Amo17g1599 443 MobiDBLite consensus disorder prediction 11 39 - -
Amo17g1599 443 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 134 284 IPR031052 GO:0006355
Amo17g1599 443 MobiDBLite consensus disorder prediction 426 443 - -
Amo17g1599 443 MobiDBLite consensus disorder prediction 310 333 - -
Amo17g1599 443 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 57 121 IPR031052 GO:0006355
Amo17g1599 443 MobiDBLite consensus disorder prediction 366 443 - -
Amo17g1599 443 Pfam FAR1 DNA-binding domain 74 119 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g1599 Amo-Chr17 62954379 62957209 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo17g1599 FAR1 2.7e-07 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g1599 - - ahf:112755379 567.385