Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g1597 GCTTCGCTCTTCGCCGCCGCCGAGGAGGGGAAAGAGGAGCTGCTCCCTCGCCAGTCATCGTCGTGCTTCCTGGTTGCCGATGAGGGAGCTGCGAGAACCGTTGCAGCTGTTGAGAAATCGAAGTTTTACAGATTCGACAAGGAAAGGAACCGGTGGAAGGAGAGAACCGATGGTGCCATCAAGTTCCCTAAGAATAAGGGTGCTATAACAAAGAGAATGACTGCAATGGAAGAAATGGCCAGAATGGATGTCCTATGCAGTGATAAAACAGGCACATTAACTCTCAACAAGCTTACAGTGGACAAGAATCTAATTGAGGTCTTTGCTGATGGAGTTAATCAGGACATGGTTGTACTTATGGCTGCAAGGGCATCAAGGCTAGAGAACCAAGATGCAATTGATTGTGCAATTGTATCTATGTTAGCAGATCCAAAGGAGCTTGCAATTACTAAGGAAACAGGAAGGCGTCTTGGAATGGGCTCTAACATGTATCCTTCTGCGTCGCTGCTAGGAGAAAGCAAAGATAATTTTGCTTCTGTTCCCGTCGATGATCTTATAGAGAATGCAGATGGTTTTGCTGGTGTCTTTCCTGAGCACAAATATGAGATTGTGAAGAGCTTACAAGCTAGAAAGCACATTTGTGGGATGACTGGTGATGGAGTGAATGATGCACCAGCTTTGAAGATAGCAAACATAGGTATCGCTGTAGTAGATGCAACAGATGCTGCAAGAAGTGCCTCTAATACAGTTCTAACAGAACCTGGGTTGAGTGTGATCATAAGTGTTGTTTTAACTAGCCGTGCAATTTTCCAAAGAATGAAAAACTACACAATATATGATGTATCTATCACCATCCGTATTGTGGTTGGCTTTATGTTACTCACATGCATTTGGGAATTTAACTTTCCTCCCTTTATGGTTCTTGTCATAGCCATTCTCAACGATGGTATTACTATCTGCTCTCAAATACCATATTTAAAATGCATTATTTGGAGGTCTTCTCTACAGTTATAG 1014 0.431 ASLFAAAEEGKEELLPRQSSSCFLVADEGAARTVAAVEKSKFYRFDKERNRWKERTDGAIKFPKNKGAITKRMTAMEEMARMDVLCSDKTGTLTLNKLTVDKNLIEVFADGVNQDMVVLMAARASRLENQDAIDCAIVSMLADPKELAITKETGRRLGMGSNMYPSASLLGESKDNFASVPVDDLIENADGFAGVFPEHKYEIVKSLQARKHICGMTGDGVNDAPALKIANIGIAVVDATDAARSASNTVLTEPGLSVIISVVLTSRAIFQRMKNYTIYDVSITIRIVVGFMLLTCIWEFNFPPFMVLVIAILNDGITICSQIPYLKCIIWRSSLQL* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g1597 337 PANTHER CALCIUM-TRANSPORTING ATPASE 146 319 - -
Amo17g1597 337 PANTHER CALCIUM-TRANSPORTING ATPASE 65 146 - -
Amo17g1597 337 SUPERFAMILY HAD-like 84 309 IPR036412 -
Amo17g1597 337 Pfam haloacid dehalogenase-like hydrolase 167 230 - -
Amo17g1597 337 Gene3D - 83 97 IPR023214 -
Amo17g1597 337 Gene3D - 147 254 IPR023214 -
Amo17g1597 337 Pfam RanBP1 domain 38 131 IPR000156 GO:0046907
Amo17g1597 337 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 192 297 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Amo17g1597 337 ProSitePatterns E1-E2 ATPases phosphorylation site. 88 94 IPR018303 -
Amo17g1597 337 PANTHER PLASMA MEMBRANE ATPASE 146 319 - -
Amo17g1597 337 PANTHER PLASMA MEMBRANE ATPASE 65 146 - -
Amo17g1597 337 Gene3D - 255 320 - -
Amo17g1597 337 Gene3D - 65 82 - -
Amo17g1597 337 PRINTS H+-transporting ATPase (proton pump) signature 189 205 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Amo17g1597 337 PRINTS H+-transporting ATPase (proton pump) signature 217 233 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Amo17g1597 337 PRINTS H+-transporting ATPase (proton pump) signature 248 273 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Amo17g1597 337 Gene3D - 98 146 IPR023299 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g1597 Amo-Chr17 62828314 62831701 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g1597 146 316 Primary Pumps ATPases AT5G62670 83.140 9.05e-95 300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g1597 K01535 - aip:107607271 493.041