Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g1570 ATGAGCAACACTATAGTATGCCCTTCTGATCAATCAATCAAACATGGTCCAGAAAGTGAGTATTCTGATGAAGAAAGGAAGAAAAAGCTTGGTTCCGTGAAGAAGTTGGCAATTAGTGCCTCAAAAAACTATAGGAATTCCTTGAAGAAGGGACGGCGACACAGCAGGGTGATGTCGGTCTCTATCGACGATGAACTTGATGCAGAAGAGATGAAGGCGGTCGACGCCTTTCGCCAAGTACTTGTTTTGGAAGAGCTCTTGCCCTCAATGCATGATGATCATCACACAATGCTAAGATTCTTGAGAGCAAGAAAGTTTGATGTGGAGAAAACAAAACAGATGTGGGCAGATATGCTTAAATGGAGGAAGGAATTTGGAGCAGACACTATCATGGAGAACTTTGAATTCAAAGAAATAGATGATGTTCTGAAATACTACCCACAAGGGCATCATGGAGTTGATAAGGATGGAAGACCTGTTTACATTGAAAGATTGGGTCAAGTTGATTCTACAAAATTGTTGCAAGTAACAACTATCGACCGTTATCTTAAGTACCATGTAAAAGAGTTTGAGAGGACCTTCAGAATTAAAATGCCAGCGTGCTCTATTGCTGCAAAAAAGCACATTGACCAAAGCACAACAATTTTGGATGTGCAAGGAGTGGGACTCAAAAGTCTGAACAAAGCTGCAAGGGATCTCATTCAGCGTCTTCAGAAGATTGATGGTGACAATTATCCTGAGTCCCTGAACCGTATGTTCATCATCAATGCTGGACCAGGATTTAGGCTCCTGTGGAATACCGTTAAGACATTCCTTGACCCCAAGACCACCTCAAAAATCCATGTGCTAGGTAACAAATACCAGAGCAAATTGCTTGAAATCATTGATGCCAGTGAACTTCCAGAGTTCTTGGGTGGCACTTGTACTTGTGCTGATAAAGGTGGTTGCATGCGTTCTGACAAGGGACCATGGAATGATCCAATGATCTTTCAGATGGTACAAAATGGCAAGGGCAGATACAATACAAGAACCTTATCTGGGATCAATGAGAAACCACTTTCAGAAAATGCGGTAACACAAGAGCAGGGATTCAAAGAATCTATCTTAAAGGGATGCCAAGAAGCTGTTCTTGTAGCTCCTACTGAACACGCTGCATACTCAAAAATAGTGGAATCTGAATACACTGCTTTTCCAGAAGCCTTAAAGCAGTACAGTGTGTATAAGTATGAAGACCTTGATCCATCTTTGAAGAAGTTAGTAGACACTAATAAATATACACTTTCCACAGCTGAGAAAACTAAACTTACTAGTCAGTTAGTTGGTGGATTAATGGCCATTTTCATGAGTTTTATAACAATGGTCCGCTTCACGAGGAACATGCCAAGGAAAATCACAGAAGCAGCCCTATATGGTGGCGCAGTATACTATGATGGTGCTATGATGAGAGCCCCCAAAGTCTCAATTAACGATCACATGACCATGATGAAGCGCATGGCTGAACTAGAAGAAAAAATGAATGCTCTCAGCATAAGGCCAATCATGTCACCTGAAAAGGAGGAACTACTAAACAGTGCTGTAAGCAGAGTTAGTACTTTGGAACAAGATTTAGCTGCAACCAAAAAGGCACTTGATGAAGCCCTTGCTAAACAAATTGAGCTCCAATCCGAAATAGACAAGAAAAGGAAGAAGAAAAATAAGTTGAAGAAGTTGTTTTGCTACCGTGAGTGA 1728 0.4115 MSNTIVCPSDQSIKHGPESEYSDEERKKKLGSVKKLAISASKNYRNSLKKGRRHSRVMSVSIDDELDAEEMKAVDAFRQVLVLEELLPSMHDDHHTMLRFLRARKFDVEKTKQMWADMLKWRKEFGADTIMENFEFKEIDDVLKYYPQGHHGVDKDGRPVYIERLGQVDSTKLLQVTTIDRYLKYHVKEFERTFRIKMPACSIAAKKHIDQSTTILDVQGVGLKSLNKAARDLIQRLQKIDGDNYPESLNRMFIINAGPGFRLLWNTVKTFLDPKTTSKIHVLGNKYQSKLLEIIDASELPEFLGGTCTCADKGGCMRSDKGPWNDPMIFQMVQNGKGRYNTRTLSGINEKPLSENAVTQEQGFKESILKGCQEAVLVAPTEHAAYSKIVESEYTAFPEALKQYSVYKYEDLDPSLKKLVDTNKYTLSTAEKTKLTSQLVGGLMAIFMSFITMVRFTRNMPRKITEAALYGGAVYYDGAMMRAPKVSINDHMTMMKRMAELEEKMNALSIRPIMSPEKEELLNSAVSRVSTLEQDLAATKKALDEALAKQIELQSEIDKKRKKKNKLKKLFCYRE* 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g1570 575 PRINTS Cellular retinaldehyde-binding protein signature 298 307 - -
Amo17g1570 575 PRINTS Cellular retinaldehyde-binding protein signature 265 284 - -
Amo17g1570 575 PRINTS Cellular retinaldehyde-binding protein signature 96 118 - -
Amo17g1570 575 CDD SEC14 139 307 IPR001251 -
Amo17g1570 575 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 138 312 IPR001251 -
Amo17g1570 575 PANTHER SEC14P-LIKE PHOSPHATIDYLINOSITOL TRANSFER FAMILY PROTEIN 7 567 - -
Amo17g1570 575 Pfam CRAL/TRIO domain 144 306 IPR001251 -
Amo17g1570 575 Pfam CRAL/TRIO, N-terminal domain 84 117 IPR011074 -
Amo17g1570 575 Coils Coil 223 243 - -
Amo17g1570 575 SMART sec14_4 138 309 IPR001251 -
Amo17g1570 575 Gene3D - 25 125 - -
Amo17g1570 575 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 7 567 - -
Amo17g1570 575 Gene3D - 126 337 IPR036865 -
Amo17g1570 575 SMART CRAL_TRIO_N_2 93 118 IPR011074 -
Amo17g1570 575 MobiDBLite consensus disorder prediction 1 27 - -
Amo17g1570 575 SUPERFAMILY CRAL/TRIO domain 138 335 IPR036865 -
Amo17g1570 575 Coils Coil 529 570 - -
Amo17g1570 575 Coils Coil 491 511 - -
Amo17g1570 575 SUPERFAMILY CRAL/TRIO N-terminal domain 64 133 IPR036273 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g1570 Amo-Chr17 60605212 60609339 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g1570 72 303 Acyl Lipid Metabolism Gene Families AT5G47730 28.631 3.10e-22 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g1570 - - gmx:100798374 769.615
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo08g0214 08 3577373 3580819 Amo17g1570 17 60605212 60609339 hybridization
Amo06g0920 06 12660936 12662338 Amo17g1570 17 60605212 60609339 PCT