Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g1559 ATGGCAATGCTTCTCTTCGTCCCCCTCTTGGACTACAAAAGGAAGATGACTAAAAGATACCGGGAATGTGCCGTGGGAATCGACCTTTGTACGACATACTCATGTGTTACTGTATGGCTGGATGAGTATCAACGAGTGGAGATTGTCCACAATGACCAAGGCAATAGAACAATACCATCATGTGTTGCATTTACTAACAAGCAAAGGTTGATTAGTGATGCTGCTAAGAACCAAGCTACGTCCAATCCAGATTCTAAAAGGTTGATTGGTAGGAAATATAGTGACTCCATTATCAAGAATGACATGATGATGTGGCCATTTAAAGGCCAAGAGAAGCATCTTCTTGCAGAAGAAATTTCCTCTATAATTCTCACAAAAATGTGGAAGATTGCAGAGAAATATATAGAAGCTCCTGTCAATAATGCAGTAATTACTGTCCCTGCTTATTTCACTAACTCTCAACATAAAGCCACGAAAGTTTTCGGTGCCATTGCAGGCCTCAGTGTCATGAGAATTATCAATGAGCCTACAACTGCTGTAATTGCATATGGCCTGAACAAGCTAGCTGATTGTAATGGAGAACGAAACATTTTCATCTTTGACCTCGGTGGTGGTACTTTTTATGTGTCTCTGCTTATAATTAAAGATAAAGTCTTTGAAGTTAAGGCCACAACAGGGAACATTCATCTTGGTGGAGAAGACTTCGATAACAGAATGGTGAATCACTTCGTACAAGAATTCAAAGGGAAGAATAATGTGGATATTAGTGGGAACTCAAGAACCTTAAGAAGGACACTCTCATTTGCTTTTGATACTGTTATTGAACTTGATGTTTTATATCAAGGCATTGACCTTTATTCATCATTCAGCCGTGCCAAGTTTGAGGAACTAAACATGGAACTCTTTAGAAATTGTATGGAAACAGTAGATAAGTGTCTCACTGATGCTAAGATAGACAGGTCTTGTACACATGATGTTGTTCATGTTGGCAGCTCATCTAGGATTCCCAAAGTGCAGCAGCTATTGCAAGAATTCTTCAGAGGTAAGGATCTTTGCAAGAGTATCAACTCGGATGAAGCTGTTGCTTATGGAGCAGCAATTGTGGCTACTTTATTGACTGAAGACATCAAGCGAGCTCTAGAAATGGTTCTATTAGATGTTACACCCCTATCACTTGGTATAAAGACATTTGGAGACCTCATAGGAATAGCGATTCCTAGGAATACTACCATACCTGCAAAGAGAACAAAAAGATATTGTACAGCTAAAGATAACTATACCATTGTTCTGATAGCTGTTTATGAGGGTGAGAGGACAAGAGCCAGAGATAACAACTTGCTTGATTGGTTTAATCTTTCTGGTCTTTCTCATGCTCCTCGTGGCCATCCTTTATATGTATGCTTTGATATAGATGCTGATGGTATCCTAAATGTGTCTGCTTGGGAAGAAACCAATCGTTGTATCATTGATAATGTCAAGAAGTTTTAG 1488 0.3918 MAMLLFVPLLDYKRKMTKRYRECAVGIDLCTTYSCVTVWLDEYQRVEIVHNDQGNRTIPSCVAFTNKQRLISDAAKNQATSNPDSKRLIGRKYSDSIIKNDMMMWPFKGQEKHLLAEEISSIILTKMWKIAEKYIEAPVNNAVITVPAYFTNSQHKATKVFGAIAGLSVMRIINEPTTAVIAYGLNKLADCNGERNIFIFDLGGGTFYVSLLIIKDKVFEVKATTGNIHLGGEDFDNRMVNHFVQEFKGKNNVDISGNSRTLRRTLSFAFDTVIELDVLYQGIDLYSSFSRAKFEELNMELFRNCMETVDKCLTDAKIDRSCTHDVVHVGSSSRIPKVQQLLQEFFRGKDLCKSINSDEAVAYGAAIVATLLTEDIKRALEMVLLDVTPLSLGIKTFGDLIGIAIPRNTTIPAKRTKRYCTAKDNYTIVLIAVYEGERTRARDNNLLDWFNLSGLSHAPRGHPLYVCFDIDADGILNVSAWEETNRCIIDNVKKF* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g1559 495 Pfam Hsp70 protein 24 484 IPR013126 GO:0005524|GO:0140662
Amo17g1559 495 SUPERFAMILY Actin-like ATPase domain 192 372 IPR043129 -
Amo17g1559 495 PANTHER HEAT SHOCK 70 KDA PROTEIN 20 485 - -
Amo17g1559 495 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 374 494 IPR029047 -
Amo17g1559 495 PANTHER HEAT SHOCK PROTEIN 70KDA 20 485 IPR013126 GO:0005524|GO:0140662
Amo17g1559 495 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 381 486 IPR029047 -
Amo17g1559 495 SUPERFAMILY Actin-like ATPase domain 24 186 IPR043129 -
Amo17g1559 495 Gene3D - 188 352 - -
Amo17g1559 495 PRINTS 70kDa heat shock protein signature 381 400 - -
Amo17g1559 495 PRINTS 70kDa heat shock protein signature 75 83 - -
Amo17g1559 495 PRINTS 70kDa heat shock protein signature 355 375 - -
Amo17g1559 495 PRINTS 70kDa heat shock protein signature 53 65 - -
Amo17g1559 495 PRINTS 70kDa heat shock protein signature 142 162 - -
Amo17g1559 495 PRINTS 70kDa heat shock protein signature 323 339 - -
Amo17g1559 495 PRINTS 70kDa heat shock protein signature 23 36 - -
Amo17g1559 495 PRINTS 70kDa heat shock protein signature 205 215 - -
Amo17g1559 495 PRINTS 70kDa heat shock protein signature 461 477 - -
Amo17g1559 495 ProSitePatterns Heat shock hsp70 proteins family signature 2. 199 212 IPR018181 -
Amo17g1559 495 Gene3D - 25 369 - -
Amo17g1559 495 Gene3D - 84 122 - -
Amo17g1559 495 Gene3D Actin; Chain A, domain 4 232 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g1559 Amo-Chr17 59826698 59829547 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g1559 16 493 Calmodulin-binding Proteins AT3G12580 59.029 0.0 597
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g1559 K03283 - gmx:102667578 642.499