LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo17g1553	CTCCGTCGAAGACCAGCCCGCCGCCGCTGTCGAGTCAAACCCGAGAAAGAGAGTGTGTGCGACGATGAGAGAGGAGGAGCCGTCACCAAACGCGTCGCCGCCGCTGGAGGAGCTTCGCTCTTCGCCGTCGCCGAGGAGGGGAAAGAGGAGCTGCTCCCGTCGCGCCAGTCACCGTCGTGCTTCCTGGTTGCCGATGAAGGAGCCGCGAGAACCGTTGCCGTCGCGGAGGAGGGGGACGCGCGAGAGGGAGCRTTCTCAGGAAATCCAAGGAAATCAAGTTCTGGGTTGATTCTTTTCTGGTTCAGTAAGATGAGTTCTCAGGAAAAGTTTCTGACTTTGGGTGGAAATGAACAACAACATGTTGATGCTGATGCTGATGCAGCAGCTTCTTGCAGAAGAACAGTTTCTCTTCCAGCTCAAAAGTTTCTACTATTGCAGAAGAACAGTCYTCGTGCTGCCGTCTCCCTCTCCTTCACTCATCGCACCTCTGTTTCCATCTCTCAACCCTCCTCCTCGCCACCGGTCAMTGCCAACTCCCTCCCTTCTAATTATGTTGGAGATCTACATGGAGATCTTAAGCAGGCTAGATATGCACTTCAAATGGCTGGTGTATTGAGCTCTAATGGTCAAGACTTATGGACTGGTGGAGAAACGGTGTTGATTCAAGTTGGAGATATACTAGATCGAGATGAAGAAGAAATTGCTATCTTGTCCTTGTTGCGATCATTGGATAAACAGGCAAAGGCAAAAGGTGGAGCTGTGTTTCAGGTCCTTCTTAGAGGCCCAAAGAACTTCYGGGAAGCSGTGAAACACTTGGGTCTTGCTCTTGGTGTTCTTTACAGCTATATCAAGCCTTATGTACGATCTAAGGGAAGGAAGTTTGAGAAGGTTAGAGGAAGGAAGAATAGCAAAGGACTTGGGGTTTAA	927	0.5016	LRRRPARRRCRVKPEKESVCDDERGGAVTKRVAAAGGASLFAVAEEGKEELLPSRQSPSCFLVADEGAARTVAVAEEGDAREGAFSGNPRKSSSGLILFWFSKMSSQEKFLTLGGNEQQHVDADADAAASCRRTVSLPAQKFLLLQKNSXRAAVSLSFTHRTSVSISQPSSSPPVXANSLPSNYVGDLHGDLKQARYALQMAGVLSSNGQDLWTGGETVLIQVGDILDRDEEEIAILSLLRSLDKQAKAKGGAVFQVLLRGPKNFXEAVKHLGLALGVLYSYIKPYVRSKGRKFEKVRGRKNSKGLGV*	309

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo17g1553	308	SUPERFAMILY	Metallo-dependent phosphatases	173	244	IPR029052	-
	Amo17g1553	308	Pfam	Ribosomal protein 60S L18 and 50S L18e	255	305	IPR021131	-
	Amo17g1553	308	Gene3D	-	123	261	IPR029052	-
	Amo17g1553	308	PANTHER	SHEWANELLA-LIKE PROTEIN PHOSPHATASE 1	175	258	-	-
	Amo17g1553	308	PANTHER	SHEWANELLA-LIKE PROTEIN PHOSPHATASE 1	175	258	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo17g1553	Amo-Chr17	59335030	59338216	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo17g1553	257	308	Cytoplasmic Ribosomal Protein Gene Family	AT3G05590	67.308	1.95e-16	72.8

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo17g1553	-		-	aip:107622497	170.244