Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g1547 ATGTTGCACTGTCTCAACAGTAACGCTTCGGGCTCCGAGATGACAGTGCTAGAAAGGCAAAGGGCAACGATCAAGTGGCAACACAACAACAATCATCACCAAGGATACTCTTCTTCTTCTTCACCTTCCCCATCTTCATCTTCTTCAATCTCACTTGTTCAAGTTCAGAGCAGCTCTCCTGCTTGCCTTGCTGCTGGAGCGTGGCCCAAACTCGACAACAACTTTCTCATGGGATTCACCTCTTCTCCTTCTTCTGGATTCCCGCTACCTCCTCCTCCTCCTCCTACAACTTCTGCTGCTTCTTTTGATCTAAATTCCGCAATCTCAAGGACTTCCAGCTGTCCACTGCCTTCTCTTGCAGAGGGGAAAGAGACTACTACTCCCAATAACAAGAGAAAAACTGACAAGTTTCACAACACCAAGGTTGTTGCTTCAGATAATGATAACAAGGACAAGAGGGTCAAAGTGGCTGCTCCCAATGACTCAGCAACCGTAGGCAAGAAAGGCACACAAGATTGTGGAGATAATTCCAACAAGGATAATTCAAAAGTTTCTGAGGTTCAGAATCAGAAGCCAGATTACATTCATGTCCGAGCACGCCGGGGACAAGCCACTGATAGCCATAGCTTAGCTGAAAGAGTTAGAAGGGAAAAAATCAGCGAGAGAATGAAGTTCTTGCAGGATTTAGTGCCCGGTTGCAACAAGATTACTGGAAAAGCTGGAATGCTTGATGAAATCATCAACTATGTCCAGTCCCTTCAACGACAAGTTGAGTTCTTGTCAATGAAATTAGCTGCTGTGAACCCAAGACTTGACTTCAACATGGATGATCTCTTTACCAGAGAGGTGTTTCCTGCATGTGCTGCAAGTTTTCCTGCCATAGAAATGTCACCAAACATGGCTAACCCTGCCTCTTATCTTCACTTCAATTCATCACAACAAATAGATGCAGGGATAAACCCTCAAGATATCAGTCTCCGAAGGACCATAAGTGCCCCAGTATCCGCGCCAGAAACCTTTCTTGATTCGTCTTGTTTCACTCAAACTCTGCCCTCCTCAACATGGGAAGGTGATTTTCAAAACCTTTACAGTGTGGCTTTTGATCAAGCAAGAGCAGCATCCTTTCCTTCTCAGCTATTCACAGGTCTACTTGAACCGAGCAATCTAAAGATGGAGATGGAGATGTAG 1188 0.4512 MLHCLNSNASGSEMTVLERQRATIKWQHNNNHHQGYSSSSSPSPSSSSSISLVQVQSSSPACLAAGAWPKLDNNFLMGFTSSPSSGFPLPPPPPPTTSAASFDLNSAISRTSSCPLPSLAEGKETTTPNNKRKTDKFHNTKVVASDNDNKDKRVKVAAPNDSATVGKKGTQDCGDNSNKDNSKVSEVQNQKPDYIHVRARRGQATDSHSLAERVRREKISERMKFLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLDFNMDDLFTREVFPACAASFPAIEMSPNMANPASYLHFNSSQQIDAGINPQDISLRRTISAPVSAPETFLDSSCFTQTLPSSTWEGDFQNLYSVAFDQARAASFPSQLFTGLLEPSNLKMEMEM* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g1547 395 CDD bHLH_AtBPE_like 193 278 - -
Amo17g1547 395 MobiDBLite consensus disorder prediction 30 52 - -
Amo17g1547 395 MobiDBLite consensus disorder prediction 126 157 - -
Amo17g1547 395 MobiDBLite consensus disorder prediction 112 190 - -
Amo17g1547 395 PANTHER TRANSCRIPTION FACTOR BHLH63-LIKE 16 374 - -
Amo17g1547 395 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 201 272 IPR036638 GO:0046983
Amo17g1547 395 MobiDBLite consensus disorder prediction 164 189 - -
Amo17g1547 395 Pfam Helix-loop-helix DNA-binding domain 207 254 IPR011598 GO:0046983
Amo17g1547 395 Gene3D - 200 274 IPR036638 GO:0046983
Amo17g1547 395 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 16 374 IPR024097 GO:0006355
Amo17g1547 395 SMART finulus 209 259 IPR011598 GO:0046983
Amo17g1547 395 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 203 253 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g1547 Amo-Chr17 58114644 58116915 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g1547 13 363 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G34530 38.727 3.44e-63 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo17g1547 HLH 5.8e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g1547 - - gmx:100798855 389.037