Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g1541 ATGGCTTCCGCAGAAATTGAGTACCGTTGCTTCGTTGGTGGGCTTGCCTGGGCCACCGACAACGAAGCCCTCGAGAAAGCCTTCTCTTCCTATGGCGAGATCGTCGAATCGAAGGTTATCAATGATCGTGAGACTGGAAGGTCGAGGGGTTTCGGATTTGTAACCTTCGCCACAGAGCAGGCCATGAGGGATGCCATCGAGGGGATGAATGGCCAGAACCTTGATGGACGTAACATCACTGTGAACGAGGCGCAGTCCCGTGGTCGGGGTGGTGGCGGCGGTGGTGGTTACGGTAGTGGTGGCGGCGGTGGTTATGGTGGTGGTGGTGGTTACAACCGTGGAGGAGGAGGAGGAGGTGGTGGATATGGAGGCCGCCGTGAAGGCGGAGGTGGTTACAACCGCGGCGGAGGTGGTGGAGGCTACGGTGGTAACGGTGGTAATGGTGGAGGTGGCTATGGAGGAGGTGGTTACGGTGGTGGGCGGGACCGTGGGTACGGAGACGGTGGATCCCGTTACTCAAAGGGTGGTGGTGCTTCTGATGGAAATTGGAGGAATTAG 558 0.5842 MASAEIEYRCFVGGLAWATDNEALEKAFSSYGEIVESKVINDRETGRSRGFGFVTFATEQAMRDAIEGMNGQNLDGRNITVNEAQSRGRGGGGGGGYGSGGGGGYGGGGGYNRGGGGGGGGYGGRREGGGGYNRGGGGGGYGGNGGNGGGGYGGGGYGGGRDRGYGDGGSRYSKGGGASDGNWRN* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g1541 185 Gene3D - 2 106 IPR012677 -
Amo17g1541 185 SUPERFAMILY RNA-binding domain, RBD 9 118 IPR035979 GO:0003676
Amo17g1541 185 SMART rrm1_1 9 82 IPR000504 GO:0003723
Amo17g1541 185 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
Amo17g1541 185 MobiDBLite consensus disorder prediction 151 185 - -
Amo17g1541 185 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 79 IPR000504 GO:0003723
Amo17g1541 185 PANTHER RNA-BINDING PROTEIN GRP1A, PUTATIVE, EXPRESSED-RELATED 1 135 - -
Amo17g1541 185 PANTHER GEO13361P1-RELATED 1 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g1541 Amo-Chr17 56818902 56820714 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g1541 10 88 Eukaryotic Initiation Factors Gene Family AT2G23350 34.177 1.99e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g1541 - K13195 gmx:100777821 165.622