Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g1536 ATGGATCTCACTGAGGATTTATTGCAAATAGTGTGCCCCCAATTTTTAAGTCAATTTGAGATGTTAATGGTTTTCTCATTTTTGGATCCTCCCAATCTATGCAAAGCTGCACCAGGGTTTGTACGCAGTGGAGCCCCTGATGAGCATAATCACGGGACCACTGTCAAGGATGCTATATGCGATTTTATTCCAAAATCTGCTCTTACAATCTCTCCATTCACTGAACTTTTGGAAACCAAAGAGGATTCCGATTTCTTAGGTGATGTGGTGGGTCTGATTCGGTGTGCCTTATTTGGTGAATATGTTAATGAAGTTAATCGATTTCTATCTTCTTGGTATGCTGAACAGCCAGTTGTGGTTTTACAACATGCCAAAGTTAAGGTTTTTAGAGGTAGAGTTGGACTTCAGAATGTTATGTTTGCATCAAGGCTTGGATTTAATCTTAACATCCCAGAGGTGGCAGCATTTCGGAAAAGTTTTATTTCACATGGAGTTAGTGCATCCCAACCCATTGGCATTATTGGATCTGGAAAAAATATCGGAATAGAAGAAGACTTTATGAAGCTCACACCTAGGTGTATTGTGAAGTCGCTTGATCATAACAGCCAGGCTGAAACTTTTGTTGTACTAGCGAAGATAGCTGAAATAGTTGAGGATGGTCCTTGGTGGTACTCTGCTTGTGTGTGTGGCAGAGGTGTTCAAGCAGAATCTGGGATTTACTTTTGTCAATTTTGCAACATCCATGTTACAAATGTGACTCCTAGGTTTAGAGTGAAGGTGTTGGTTGAGGATTCGACTGGTGTTTCTATTTTTGTGCTCTTTGATCGTGAGGCAAGTTACCTACTGAATAAGACTTGTGCCCAGCTGTTTGAACAACATCTTAAGGATGTTGATTCTCCTCCTATATTCCAAGAAATTGTTGGAAAAACTATGTTGTTCAAGGTTCTTATTAGGCCTGTTGGGATGGAGAAATTCAAAGGGACTTATCTAATGAGGCGTGTTTGTGATGATGCTGCAATAGTTAGAATGTTTGAGCTCTCTGGTTCAGATTTGAGTCCTGAAAAGGCTGAGTTTGTACCAAAAGGAGAAGGATCATTTGGGGAACCCCCTAAGGTTACCAAATCATCGAATTTGGGATTGACTCCTTCCAGCTGCTCTGAGCTCTTTGCTGGTTCGCCTCAACGTACCCAAAAGGAATCAAGTGTTGTTGATTTGGGAGCTGATGAAGATGCTAAGAGAAAGTCTGTTGATACTGTGATGGATAAGTTAAATGAAGTGGATAGTTTTGAACATTCATGTGATGAAGTTGATGAAAGTGAAGAGTATGTGGTTGGCCTTAATCGAAGCTCTCTTGATGCTGAGAAAGATGTGAAGCCTTCGTTGAAGAAGTTGAGAAGATCCTTGAGGCTGCAATTTGATGAAGCTGATGAGTCTCGTGGCTCGGGGAATGATGGCTCCTCTAGACAGGGGTGCATTCTTCCTAGAATGGTTAATGTGGGTTAG 1503 0.4125 MDLTEDLLQIVCPQFLSQFEMLMVFSFLDPPNLCKAAPGFVRSGAPDEHNHGTTVKDAICDFIPKSALTISPFTELLETKEDSDFLGDVVGLIRCALFGEYVNEVNRFLSSWYAEQPVVVLQHAKVKVFRGRVGLQNVMFASRLGFNLNIPEVAAFRKSFISHGVSASQPIGIIGSGKNIGIEEDFMKLTPRCIVKSLDHNSQAETFVVLAKIAEIVEDGPWWYSACVCGRGVQAESGIYFCQFCNIHVTNVTPRFRVKVLVEDSTGVSIFVLFDREASYLLNKTCAQLFEQHLKDVDSPPIFQEIVGKTMLFKVLIRPVGMEKFKGTYLMRRVCDDAAIVRMFELSGSDLSPEKAEFVPKGEGSFGEPPKVTKSSNLGLTPSSCSELFAGSPQRTQKESSVVDLGADEDAKRKSVDTVMDKLNEVDSFEHSCDEVDESEEYVVGLNRSSLDAEKDVKPSLKKLRRSLRLQFDEADESRGSGNDGSSRQGCILPRMVNVG* 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g1536 500 Gene3D - 179 341 IPR012340 -
Amo17g1536 500 MobiDBLite consensus disorder prediction 472 500 - -
Amo17g1536 500 SUPERFAMILY Nucleic acid-binding proteins 199 318 IPR012340 -
Amo17g1536 500 SUPERFAMILY Nucleic acid-binding proteins 86 165 IPR012340 -
Amo17g1536 500 CDD RPA1_DBD_C 195 339 IPR013955 -
Amo17g1536 500 Gene3D - 88 169 IPR012340 -
Amo17g1536 500 PANTHER REPLICATION FACTOR A 1, RFA1 93 290 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Amo17g1536 500 Pfam Replication factor-A C terminal domain 207 317 IPR013955 -
Amo17g1536 500 MobiDBLite consensus disorder prediction 356 377 - -
Amo17g1536 500 CDD RPA1_DBD_B_like 93 161 - -
Amo17g1536 500 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 93 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g1536 Amo-Chr17 56574226 56582891 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g1536 80 289 Core DNA Replication Machinery Family AT5G08020 24.771 5.42e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g1536 - - aip:107607298 818.15