Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g1530 ATGTCTTCCGACGATTTCCTATCACTTATTGATCCATCTTCTCCCTCGCCAACGCCTCCCTCCGGTTCCTCCGACACCTCCTCTCCCCCACCTCCGCCCCCATCAGACGATTCCTCTTCCTCGCCCCCGCCTCCCCCAGACTCCTCCTCACCACCAACTCCACCGCCACCCTCAGACTCATCATCTCCACCTCCTCCTCCACCCTCGGACTCATCCTCTCCACCTTCGCCTAATAATGAGGATTCTTCTTCCTCCTCCTCCTCGTCCTCCCCGCCGCCGCCACCACCACCATCACCCAAAGGCGACGAGAACAAGGACGACTCCTCTTCCTCATCTCCACCACCACCGTCACCTCCTCCTCCCCCTCCTCCCTCTCCCTCTGACAATAACGACAACAACAAAACATCCGGCAAAGTACCACCGGCATCGGGCGATGTTAGTTCTCCTCCGCCGCCACCTCCTACACGTAGTCGATTAGGTCCACCATCAGGTAGAACAGCTCCTCCACCAGGGCTATCGAAGTCGAAGGACGAGAATAGCGGTCAAATGAGCACGACGGCTATAATAGGAATCGCAGCTGCAAGTGGTTTCTTACTTCTTGTCATCATACTCTTCTTTGTCGTACGTGCAAGAAGAAAGAAAAGAGAGGACGCTCCCATTCGTTACTTCACTAATACCCAACCTGGCGGACGAGGTCCGGGATACAATAATAATGATGGTGACCATGCTATGAATATACCTCCACCACCAGGTGCAGCATGGGGAACAGTAGGAACAGCACCAACATCAGGCGGAGGTTGGGGAATGAATCCCAATTCCCAGCCATACAGTGGAAGCATGATGAGCAACTCCAGTGGTTACTCTGGTGGTTCTCAGGGTTCAGTGTATCCACCCCCACACCCTTCAGTAGCTCTAGGATTCAACCAGAGCACCTTCACCTTTGAGGAGTTATCCGTTGCCACCGGTGGCTTTTCAAAGGAAAACCTGTTGGGTCAAGGTGGGTTTGGATTTGTGCACAGAGGTGTCCTCCCCAATGGTAAGGAAGTAGCGGTGAAGAGCCTCAAAGCCAATGATGCTCAAGGAGATAGAGAGTTTCAAGCTGAGGTTGAGACTATTAGCCGTGTCCATCATCGCCATCTTGTCTCACTTGTTGGCTATTCCCTTTCCGAACAAAGAAAGATCCTCGTCTATGAATTTGTTCCCAATAAAACCCTTGAATACCACCTTCATGGAAAGGGTCGGCCTGTCATGGATTGGCCAACTAGGCTTAAAATCGCCACAGGAGCAGCGAAAGGACTTGCTTACTTGCATGAGGATTGTCATCCTCGTATTATTCATAGAGACATAAAGACTGCCAACATTCTGCTTGAAAACAACTTTGATGCCAAAGTGGCTGATTTTGGATTGGCAAAGTTCAATCAAGACACTAACACTCATGTTTCAACTCGTGTGATGGGAACATTTGGGTATTTGGCTCCTGAGTATGCATCAAGTGGCAAGCTAACTGAAAAGTCTGATGTCTTCTCCTTCGGTGTTATGCTTCTGGAGCTGATTACAGGACGACCCCCACTGGACCACACTGGTGATTATGAAGAGGATAGTTTGGTTGATTGGGCTAGACCACTCTGTGCAAAAGCATTGGAAACAGGAGAATTTACAGGGCTAGTGGATCCACGTTTAGAGGAAAATTATGACAAGCAGGAAATGAAAAACATGGTGGCTTGCGCTGCTGCCAGTGTTAGGCACTCAGCAAGGAGACGCGCAAAAATGAGCCAGATTGTGCGAGTGTTGGAGGGAGATGTCTCACTAGACGTCCTTAATAACGAAGGAGTTAAACCAGGGCAAAGTGGTGTCATGGGCGAAAGCGGTGATTATGGTTCTGCAGCATATAGCGCTGACATGAAGAGGTTCAGGATGCTAGCATTGGGAGAAAGTGGAGTTGCAAGCAGTGAGTTTGGTGGAACAAGCGAATATGGCCTCAATCCTTCTGTCTCAAGCAGTGACCTATCAACATCCACTGAATATACGAGGAGGCTATGA 2040 0.5005 MSSDDFLSLIDPSSPSPTPPSGSSDTSSPPPPPPSDDSSSSPPPPPDSSSPPTPPPPSDSSSPPPPPPSDSSSPPSPNNEDSSSSSSSSSPPPPPPPSPKGDENKDDSSSSSPPPPSPPPPPPPSPSDNNDNNKTSGKVPPASGDVSSPPPPPPTRSRLGPPSGRTAPPPGLSKSKDENSGQMSTTAIIGIAAASGFLLLVIILFFVVRARRKKREDAPIRYFTNTQPGGRGPGYNNNDGDHAMNIPPPPGAAWGTVGTAPTSGGGWGMNPNSQPYSGSMMSNSSGYSGGSQGSVYPPPHPSVALGFNQSTFTFEELSVATGGFSKENLLGQGGFGFVHRGVLPNGKEVAVKSLKANDAQGDREFQAEVETISRVHHRHLVSLVGYSLSEQRKILVYEFVPNKTLEYHLHGKGRPVMDWPTRLKIATGAAKGLAYLHEDCHPRIIHRDIKTANILLENNFDAKVADFGLAKFNQDTNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGVMLLELITGRPPLDHTGDYEEDSLVDWARPLCAKALETGEFTGLVDPRLEENYDKQEMKNMVACAAASVRHSARRRAKMSQIVRVLEGDVSLDVLNNEGVKPGQSGVMGESGDYGSAAYSADMKRFRMLALGESGVASSEFGGTSEYGLNPSVSSSDLSTSTEYTRRL* 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g1530 679 MobiDBLite consensus disorder prediction 1 180 - -
Amo17g1530 679 MobiDBLite consensus disorder prediction 144 168 - -
Amo17g1530 679 ProSitePatterns Protein kinases ATP-binding region signature. 330 352 IPR017441 GO:0005524
Amo17g1530 679 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK5 28 646 - -
Amo17g1530 679 SUPERFAMILY Protein kinase-like (PK-like) 302 597 IPR011009 -
Amo17g1530 679 MobiDBLite consensus disorder prediction 651 679 - -
Amo17g1530 679 Gene3D Transferase(Phosphotransferase) domain 1 400 608 - -
Amo17g1530 679 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 28 646 - -
Amo17g1530 679 ProSiteProfiles Protein kinase domain profile. 324 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo17g1530 679 SMART serkin_6 324 593 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo17g1530 679 Pfam Protein kinase domain 325 531 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo17g1530 679 MobiDBLite consensus disorder prediction 13 74 - -
Amo17g1530 679 Gene3D Phosphorylase Kinase; domain 1 301 399 - -
Amo17g1530 679 ProSitePatterns Serine/Threonine protein kinases active-site signature. 444 456 IPR008271 GO:0004672|GO:0006468
Amo17g1530 679 MobiDBLite consensus disorder prediction 651 673 - -
Amo17g1530 679 PRINTS Proline rich extensin signature 8 29 - -
Amo17g1530 679 PRINTS Proline rich extensin signature 70 95 - -
Amo17g1530 679 PRINTS Proline rich extensin signature 51 68 - -
Amo17g1530 679 PRINTS Proline rich extensin signature 29 45 - -
Amo17g1530 679 MobiDBLite consensus disorder prediction 111 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g1530 Amo-Chr17 56304241 56307417 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g1530 182 652 Trihelix Transcription Factor Family AT5G38560 49.156 1.54e-144 435
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Amo17g1530 Pkinase 1.7e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g1530 - - gmx:100806299 669.463