Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g1522 ATGTCTCTCGACCCTGATCTCGGGCACTCATTGTCTGTGACATCTGGTCCCAGCATGCTTCCCACAATAGATTTGATCCCAACAATYTTTTTCGGTGAAAGGATCTCAACTAGATTTGGTAAAGTTACTTGTGGAGATATTGTGATTATTCGCTCCCCTCAAAACCCTAGGAAGCTTCTGGCTAAACGATTGGTTGGAATGGAGGATGATACTGTTACATACATTTCTAACCCTGATGAGCCTGATAAGCAMGAAACTATTGTGGTATGGTTGATTCCTTATTTTTCTAGTGTTTTTCGTTCTATGGTTTTAATTAGGATTTAA 324 0.3951 MSLDPDLGHSLSVTSGPSMLPTIDLIPTIFFGERISTRFGKVTCGDIVIIRSPQNPRKLLAKRLVGMEDDTVTYISNPDEPDKXETIVVWLIPYFSSVFRSMVLIRI* 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g1522 107 Gene3D Umud Fragment, subunit A 9 97 - -
Amo17g1522 107 SUPERFAMILY LexA/Signal peptidase 13 75 IPR036286 -
Amo17g1522 107 PANTHER PEPTIDASE S24/S26A/S26B/S26C FAMILY PROTEIN 12 89 - -
Amo17g1522 107 PANTHER PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED 12 89 - -
Amo17g1522 107 CDD S26_SPase_I 10 66 IPR019533 GO:0004252|GO:0006465
Amo17g1522 107 Pfam Signal peptidase, peptidase S26 16 74 IPR019533 GO:0004252|GO:0006465
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g1522 Amo-Chr17 55722868 55723999 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g1522 19 89 MADS-box Gene Family AT1G29960 42.254 7.44e-15 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g1522 K09647 - aip:107641559 141.354