Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g1494 ATGTTTATGTCAGCCACAATGGATCAATACACACAACAGTTTCACTCGGATCCATTTCAAGGGGGTGAGTTAATGGAAGTACTTCAACCTTTTTATAGAAGTCTTTCTACAACAACCACCACCACCACAAGCACAATTACTTCATTACCCTCATCATCTAATTCCCATCTACCCTCAACTTCCACCACCTTGAATTCTTCTTCTTACTACAATCCTTCTATAAACTTCTATTCTTCTTCTCCACAGCCTGATTTCTACACTCAATATGGTTGCCCTTCAATGATGACCCCTTTGTTTCCTTCACGTTTATCAAACAGCCAGAATTTCATTGGCTTTGAGCAACCACCGTTTTCTTCTATTGGGCTCAACTATCAGATCCAGGCCCAATCACAAACACAACAGAGCAACACCCTAAGCTTCCTCAGCCCAAAGCCAATTCCCATGAAACAAGGCCCACCAAAGCCCACAAAACTCTACAGAGGCGTACGGCAAAGGCAATGGGGAAAATGGGTGTCTGAGATCAGACTCCCAAAGAACCGCACTCGGCTTTGGCTTGGAACTTTCGAGACTGCCGAGGAAGCTGCTTTGGCTTATGATAAAGCGGCTTTTAAGCTAAGAGGTGATTTCGCGAAGCTCAACTTCCCTAACCTTAAGCACCACGGTTCTTGCATCCTTGGCGGCGGTTTTGGGGAGTATAGGCCTCTTCATTCCGCTGTTGATGCCAAGTTGGATGCTATCTGTGAAAATCTCTCTCAGATTCGGAAACAAGGGAAGCAGGGAAAGAAGCCTGTGATGAGGTTAAAGTCAAAGTCAAAAGCAACAACTCCAAATGTAGAAGGAGATGATGATGGTTGTTTCAATGTTGAGAGTGAAGAAGCCTCTGCGGGGTCTTCTCCTTTGTCTGATCTTACGTTTGATGACGTCAGTGAGTCACAGTGGGATGCTCCTTCAGAACATTTTTATCTGCAGAAGTTCCCTTCTTATGAGATCAACTGGGATTCTCTATGA 1008 0.4454 MFMSATMDQYTQQFHSDPFQGGELMEVLQPFYRSLSTTTTTTTSTITSLPSSSNSHLPSTSTTLNSSSYYNPSINFYSSSPQPDFYTQYGCPSMMTPLFPSRLSNSQNFIGFEQPPFSSIGLNYQIQAQSQTQQSNTLSFLSPKPIPMKQGPPKPTKLYRGVRQRQWGKWVSEIRLPKNRTRLWLGTFETAEEAALAYDKAAFKLRGDFAKLNFPNLKHHGSCILGGGFGEYRPLHSAVDAKLDAICENLSQIRKQGKQGKKPVMRLKSKSKATTPNVEGDDDGCFNVESEEASAGSSPLSDLTFDDVSESQWDAPSEHFYLQKFPSYEINWDSL* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g1494 335 PRINTS Ethylene responsive element binding protein signature 159 170 IPR001471 GO:0003700|GO:0006355
Amo17g1494 335 PRINTS Ethylene responsive element binding protein signature 181 197 IPR001471 GO:0003700|GO:0006355
Amo17g1494 335 MobiDBLite consensus disorder prediction 42 64 - -
Amo17g1494 335 CDD AP2 157 217 IPR001471 GO:0003700|GO:0006355
Amo17g1494 335 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 3 334 - -
Amo17g1494 335 Pfam AP2 domain 159 207 IPR001471 GO:0003700|GO:0006355
Amo17g1494 335 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-4 3 334 - -
Amo17g1494 335 ProSiteProfiles AP2/ERF domain profile. 158 215 IPR001471 GO:0003700|GO:0006355
Amo17g1494 335 MobiDBLite consensus disorder prediction 257 309 - -
Amo17g1494 335 Gene3D AP2/ERF domain 158 216 IPR036955 GO:0003700|GO:0006355
Amo17g1494 335 SUPERFAMILY DNA-binding domain 158 215 IPR016177 GO:0003677
Amo17g1494 335 SMART rav1_2 158 221 IPR001471 GO:0003700|GO:0006355
Amo17g1494 335 MobiDBLite consensus disorder prediction 136 158 - -
Amo17g1494 335 MobiDBLite consensus disorder prediction 291 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g1494 Amo-Chr17 53324048 53326255 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g1494 3 335 AP2-EREBP Transcription Factor Family AT1G78080 45.232 3.82e-78 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Amo17g1494 AP2 8.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g1494 K09286 - gmx:732559 303.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g1494 17 53324048 53326255 Amo17g1494 17 53324048 53326255 ECH
Amo08g1022 08 17454785 17456880 Amo17g1494 17 53324048 53326255 hybridization
Amo17g1494 17 53324048 53326255 Amo08g1022 08 17454785 17456880 PCT
Amo17g1494 17 53324048 53326255 Amo17g1494 17 53324048 53326255 PCT
Amo08g1022 08 17454785 17456880 Amo17g1494 17 53324048 53326255 PCT