Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g1476 ATGAAAGCTAGCAACATATATAATGCATCAAAGAAGTCTCAGAACAAAGAAGAACCAAAGACTAGAACAAGAAGAAACTCCACTGACACTGTAATCACACAAAAGCTGAGTATCTCAGACCAAAAACCTTGCGCAAAAAGTACCCTTGTGCTTCAAAGTAGAAGACTATCAGATGCTGCAAGAATCTCAACATCCACATCGGCATCAACCTCGACATCATCGAATGACGACAGCAAACTGCAGCTGGCTAAGATAAATGAGAGAAACAACAAGTCTCCGGCCAGGGCACAACTGGCGGGGAACTTGCTTGTAAATAATAACACTCCAAGAGCAAAGAGCCTCCGGGAGTGTGGACCTAAGAGCAAAAAAGAGTGGACCTCCTCGTCCGGAAAAGCTTTGATGGGTAACATAATGAGGAAGAACAGCTGCGGCGGGGATGAGTTTGCGAGGAACAAGAAGGTGGTGGACCCGGAGGTGTTGAAGAACATGGGAAACAATGCGTATAAGGGAGGAAGGTTTGAAGAGGCTGTGGCGTTGTATGACAGAGCAATTGCTTTGGATTCAAGTAAGGCAACTTATCATTGCAACAAGAGTGCTGCTTTGATTGGCTTAAGAAGATTTCAAGAAGCACTTGCTGAGTGTGAGGAATCTGTTAGGTTGGAGCCTTCGTATACCAGAGCTCATAACCGTTTGGCAACAATATATTTCAGATTGGGAGAAGCAGAGAAAGCCCTCGATTGCAATCAGTTAACCCCAGATACTGATTCTGCACTGGCTTTCCAAACTCAGACTCTTCAGAACCACCTTAATAAATGCAATGAAGCTCGGAAATTTAATGAATGGGGTGTTGTACTAAAGGAAACACAGTCAGCAATATCCTTAGGGGTTGATTCATCTCCACAGGTCTATGCTTTGCAAACTGAAGCCTTGTTGAAGCTCCTAAGATATCAAGAGGCACAAGTCACCTATGAGAAAATGCCAAAATTCTCACCTGATTGGTGCAACAAGATATTTGGCTTTGCTCGCAGTTCCTACCAGTTCATGATCGCCGCACAGGTTTACTTGGCAGCTGGCAGGTTTGAGGATGCAGTTGCGGCCGCTCAGAAAGCAGCTAAGGTGGATCCAAGCAACAGAGAGGCGAATGCAATGTTAAGGAAGGCCAGAGCAGTAACATCAGCAAGAATGAGTGGAAACTTACTCTTCAAGGCATCGAAGTTTGTGGAAGCATCCGCAGTGTACAACGAAGGACTAGATCATAATCCGCACAACTCGGTCCTGCTGTGCAACAGAGCAGCGTGTCGTTCCAAGTTCGGCCAATTCGAGAAAGCTATTGAAGATTGCAATGCAGCACTCATAGTCCAGCCTTCCTACAGCAAAGCAAGGTTAAGGAGGGCAGATTGCAACGCCAAGTTGCAAAGATGGGAAGTTGCCATTCAAGACTATGAAATGCTACTAAGGGAGAAGCCAGGGGATGAGGAAGTAGCCAGGGCATTGTTTGAGGCTCAGCTACAACTTAAGATGCTCCGCGGCGAATTTATTGTAAACTTGAAATTTGGCACGAATTTGGTGTTCATTTCAAACAATGATCAATTTAGACAATACGTAACTTCTCCTGGAATGGCTGTGGTACTATTTACCAACAGGGCAGCAAACAAACAAGTACTTCTAGTGTTGGAGCAAATTAGCAAGCGATTCCCATCAGTGATTTTCCTCAAGGTGGAGATTGAGGACCATCCCTACTTGGCAAAATCAGAAGGTGTGAACTCTATTCCAGCTTTCAAAATATACAAGAATGGATCAAGGGTAAAAGAAATTTCTGGAAAAAACCATGATCTATTAGAAAAATCAGTTCAATTGTATAGCGGCTGA 1869 0.4425 MKASNIYNASKKSQNKEEPKTRTRRNSTDTVITQKLSISDQKPCAKSTLVLQSRRLSDAARISTSTSASTSTSSNDDSKLQLAKINERNNKSPARAQLAGNLLVNNNTPRAKSLRECGPKSKKEWTSSSGKALMGNIMRKNSCGGDEFARNKKVVDPEVLKNMGNNAYKGGRFEEAVALYDRAIALDSSKATYHCNKSAALIGLRRFQEALAECEESVRLEPSYTRAHNRLATIYFRLGEAEKALDCNQLTPDTDSALAFQTQTLQNHLNKCNEARKFNEWGVVLKETQSAISLGVDSSPQVYALQTEALLKLLRYQEAQVTYEKMPKFSPDWCNKIFGFARSSYQFMIAAQVYLAAGRFEDAVAAAQKAAKVDPSNREANAMLRKARAVTSARMSGNLLFKASKFVEASAVYNEGLDHNPHNSVLLCNRAACRSKFGQFEKAIEDCNAALIVQPSYSKARLRRADCNAKLQRWEVAIQDYEMLLREKPGDEEVARALFEAQLQLKMLRGEFIVNLKFGTNLVFISNNDQFRQYVTSPGMAVVLFTNRAANKQVLLVLEQISKRFPSVIFLKVEIEDHPYLAKSEGVNSIPAFKIYKNGSRVKEISGKNHDLLEKSVQLYSG* 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g1476 622 Pfam TPR repeat 164 196 - -
Amo17g1476 622 ProSiteProfiles TPR repeat profile. 344 377 IPR019734 GO:0005515
Amo17g1476 622 MobiDBLite consensus disorder prediction 1 30 - -
Amo17g1476 622 ProSiteProfiles TPR repeat profile. 157 190 IPR019734 GO:0005515
Amo17g1476 622 MobiDBLite consensus disorder prediction 58 80 - -
Amo17g1476 622 PANTHER 43KDA POSTSYNAPTIC PROTEIN-RELATED 8 619 - -
Amo17g1476 622 Pfam Tetratricopeptide repeat 350 423 - -
Amo17g1476 622 Pfam Tetratricopeptide repeat 438 491 - -
Amo17g1476 622 Pfam Tetratricopeptide repeat 200 245 - -
Amo17g1476 622 SUPERFAMILY Thioredoxin-like 505 616 IPR036249 -
Amo17g1476 622 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 8 619 IPR044534 -
Amo17g1476 622 Gene3D Glutaredoxin 517 621 - -
Amo17g1476 622 SMART tpr_5 390 423 IPR019734 GO:0005515
Amo17g1476 622 SMART tpr_5 344 377 IPR019734 GO:0005515
Amo17g1476 622 SMART tpr_5 225 258 IPR019734 GO:0005515
Amo17g1476 622 SMART tpr_5 458 491 IPR019734 GO:0005515
Amo17g1476 622 SMART tpr_5 191 224 IPR019734 GO:0005515
Amo17g1476 622 SMART tpr_5 424 457 IPR019734 GO:0005515
Amo17g1476 622 SMART tpr_5 157 190 IPR019734 GO:0005515
Amo17g1476 622 SUPERFAMILY TPR-like 395 506 IPR011990 GO:0005515
Amo17g1476 622 Pfam Thioredoxin 527 615 IPR013766 -
Amo17g1476 622 CDD TRX_family 529 607 - -
Amo17g1476 622 Gene3D Tetratricopeptide repeat domain 155 509 IPR011990 GO:0005515
Amo17g1476 622 SUPERFAMILY TPR-like 157 380 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g1476 Amo-Chr17 51552493 51557615 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g1476 158 389 U-box Gene Family AT3G07370 23.881 8.69e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g1476 K09527 - gmx:100782846 789.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g1476 17 51552493 51557615 Amo17g1476 17 51552493 51557615 ECH
Amo08g1025 08 17541908 17545421 Amo17g1476 17 51552493 51557615 hybridization
Amo17g3158 17 136027032 136028386 Amo17g1476 17 51552493 51557615 PCT
Amo07g1685 07 47827849 47832761 Amo17g1476 17 51552493 51557615 PCT
Amo17g1476 17 51552493 51557615 Amo17g3158 17 136027032 136028386 PCT
Amo17g1476 17 51552493 51557615 Amo07g1685 07 47827849 47832761 PCT