LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo17g1398	ATGCCTTTAAAAATTATAATAGTTAAAATCACACTCGCCGGCGTCTCGCGGCTTTCCTCATCGTCTCACTCGAGTCTCGTCCCTAGGCTCCTCGTCGCGGCAGCAGAAGCAACACGTGGGATCCGCTTGCTTCGTCGCCTTCCGTGGGCTCGTCGTGTGGCTTTGTGCAACCTGCATTCCCGAATTGTGGTGTCTGTGATGGCGGCGACAACAACCAAAAACATATTGAAAGAAACGGTGCAGCGATATGAAGAAGACGCAAGCGACGATAAGAGCTTCGAGGAGCTCGGTGTGGACGCTCGTCTCATTCGTGCCTTGCTCAAGAAAGGAATCGACAAGCCCACACCAATTCAGAGAGTCGCTATTCCACTCATTCTGGAAGGTAAGGATGTGGTTGCTCGTGCGAAGACAGGTTCTGGGAAGACGTTTGCTTACCTTCTCCCCATGCTACAGAAACTATTCGCTAATGTTGATCACAAGAAGCAGGCACCCAATGCTTTTGTTCTTGTTCCGACTCGCGAGCTGTGTCAACAGGTCTACACAGAGGTTGTGTCACTCATTGAGTTATGCCGAGTTCAACTGAAAGTCGCCCAATTGAATAGCAATATGCAAGCTTCTGATCTGCGTGCAGCTCTGACTGGACCTCCTGATATTTTGATATCCACACCTGCTTGCCTAGCAAAGTGCTTGTTTGATGGTGTACTTCAACCAGCTTCCATTAATGCTACGCTTGAAACTCTAATTCTTGATGAGGCAGATCTTCTATTATCATATGGATATGAAAATGATATAAAATCTTTTACGCCTCATGTACCCAGAAGTTGCCAGTGTCTTCTTATGTCCGCAACATCAAGTACTGATGTTGACAAACTAAAGAAGTTGATTCTACACAATCCATTCATTTTGACTTTGCCTGAAGTGGGAAATAATAAGGATGACGTCATCCCAAAAAATGTTCAGCAGTTCTGGATCTTGTGCCCTGCCAATGATAAATTGCTCTACACCCTTGCTGTTTTGAAGTTGGAGTTAGTGCAAAAGAAAGTTCTGATATTCACTAATGACATAGACATGAGTTTCAGATTGAAATTGTTCCTAGAAAAGTTTGGGATTAAGTCTGCTGTTTTAAATGCTGAGTTGCCACAGAATTCCCGACTCCATATTCTTGAGGAGTTCAATGCTGGTCTGTTTGATTATCTTATTGCAACTGATGTCAGTCAGTCGAAGGAGAAGGATGAAGCACCTAAAGAAGGCAAAGGATCACGAAAGTCTAGGAAACATAAACTTAAACTCGATTCTGAATTTGGAGTAGTAAGGGGAATTGATTTCAAAAATGTATTCACGGTTATAAACTTTGATATGCCTCGAAGTGTTGCAGGATATGTACATCGAATTGGACGTACAGGAAGAGCATATAGTTCTGGTGCTTCTATTTCTCTGGTTTCAACAGATGAGATGGAAACATTGGAAGAAGTAAAAGCTTTTGTTGGTGATGATGAAAACAAGGGCTCAAACACAATTGTGGAGTTTCCTTTCCTCACCAAGAATGCAGTTGAATCTTTGCGGTATAGGGCTGAGGACATTGGGAAGAGCGTAACTAAAATTGCTGTGCGAGAATCACGTGCTCAGGATTTGCGGAATGAAATTCTAAACTCTGAAAAGTTGAAGGCCCACTTTGAAAGTAATCCAAGAGACTTAGATCTGTTGAAACATGACAAAGTTTTAAGCAAGAATGCACCTCCTTCGCACCTGCGTGATGTGCCTAACTACCTATTAGACAAGACCACCCAGGAGGCAAGGAAAATGGTCAAGCTTGCAAGTGATGCAATGGGAAATAATAATCATCGCAAGGGATTCAAGAAAAAACCAAAAACAGGTGGAGACCCTCTGAAGGCTATCTCTGCTGCGGTATCAAAAAGATCGCACAAAGGTGGAAGCCACAACAATAGCGGTGGTAGACATAAGCACAAAAAGACTGACTGA	1980	0.4333	MPLKIIIVKITLAGVSRLSSSSHSSLVPRLLVAAAEATRGIRLLRRLPWARRVALCNLHSRIVVSVMAATTTKNILKETVQRYEEDASDDKSFEELGVDARLIRALLKKGIDKPTPIQRVAIPLILEGKDVVARAKTGSGKTFAYLLPMLQKLFANVDHKKQAPNAFVLVPTRELCQQVYTEVVSLIELCRVQLKVAQLNSNMQASDLRAALTGPPDILISTPACLAKCLFDGVLQPASINATLETLILDEADLLLSYGYENDIKSFTPHVPRSCQCLLMSATSSTDVDKLKKLILHNPFILTLPEVGNNKDDVIPKNVQQFWILCPANDKLLYTLAVLKLELVQKKVLIFTNDIDMSFRLKLFLEKFGIKSAVLNAELPQNSRLHILEEFNAGLFDYLIATDVSQSKEKDEAPKEGKGSRKSRKHKLKLDSEFGVVRGIDFKNVFTVINFDMPRSVAGYVHRIGRTGRAYSSGASISLVSTDEMETLEEVKAFVGDDENKGSNTIVEFPFLTKNAVESLRYRAEDIGKSVTKIAVRESRAQDLRNEILNSEKLKAHFESNPRDLDLLKHDKVLSKNAPPSHLRDVPNYLLDKTTQEARKMVKLASDAMGNNNHRKGFKKKPKTGGDPLKAISAAVSKRSHKGGSHNNSGGRHKHKKTD*	660

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo17g1398	659	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	335	517	IPR001650	-
	Amo17g1398	659	MobiDBLite	consensus disorder prediction	605	659	-	-
	Amo17g1398	659	Gene3D	-	64	304	IPR027417	-
	Amo17g1398	659	CDD	DEADc_DDX56	98	304	-	-
	Amo17g1398	659	SMART	helicmild6	359	471	IPR001650	-
	Amo17g1398	659	MobiDBLite	consensus disorder prediction	645	659	-	-
	Amo17g1398	659	Pfam	DEAD/DEAH box helicase	115	291	IPR011545	GO:0003676\|GO:0005524
	Amo17g1398	659	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	314	494	IPR027417	-
	Amo17g1398	659	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	91	119	IPR014014	GO:0003724
	Amo17g1398	659	Coils	Coil	541	561	-	-
	Amo17g1398	659	PANTHER	ATP-DEPENDENT RNA HELICASE DDX56-RELATED	82	607	-	-
	Amo17g1398	659	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	122	302	IPR014001	-
	Amo17g1398	659	PANTHER	RNA HELICASE	82	607	-	-
	Amo17g1398	659	Pfam	Helicase conserved C-terminal domain	330	471	IPR001650	-
	Amo17g1398	659	Gene3D	-	307	509	IPR027417	-
	Amo17g1398	659	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	90	303	IPR027417	-
	Amo17g1398	659	SMART	ultradead3	110	322	IPR014001	-
	Amo17g1398	659	CDD	SF2_C_DEAD	319	480	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo17g1398	Amo-Chr17	44953655	44962338	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo17g1398	92	494	Eukaryotic Initiation Factors Gene Family	AT3G19760	26.303	5.39e-37	141

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo17g1398	K14810		-	gmx:100800749	935.25