Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g1353 GAGTCAAGCAAGTACCAGTACCATGAGCAACTTTGGGATTCTCCTTTCAGCCATGCCTTACCCAACTGTCTCAAGCCAACAGCTAAATATAAAGGTTCCCAAGGATTTGATCGCTATCTTACCGTGAGAAGCAATGGTGGACTAAATCAAATGCAAACTGGTGTAAGTGACAACTTACTTTATTGTAAAGTCCTTATAGAGGAGAGGGAAGCTCATTTGAAAGCTCGGGGGTATTATAAGTGCAGCAACATGAGAGGGTGCCCTGCTAGGAAGCATGTTGAGAGGTGCTTGGAAGAGCCTTCAATGCTAATAGTTACCTATGAAGGGGAGCACAACCACCCTAAATTATCAACATAA 357 0.4342 ESSKYQYHEQLWDSPFSHALPNCLKPTAKYKGSQGFDRYLTVRSNGGLNQMQTGVSDNLLYCKVLIEEREAHLKARGYYKCSNMRGCPARKHVERCLEEPSMLIVTYEGEHNHPKLST* 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g1353 118 Pfam WRKY DNA -binding domain 74 114 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo17g1353 118 SUPERFAMILY WRKY DNA-binding domain 74 115 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo17g1353 118 Gene3D WRKY domain 49 115 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo17g1353 118 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 75 117 - -
Amo17g1353 118 SMART WRKY_cls 73 115 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo17g1353 118 ProSiteProfiles WRKY domain profile. 76 116 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo17g1353 118 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 75 117 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g1353 Amo-Chr17 42679441 42680752 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g1353 76 116 WRKY Transcription Factor Family AT2G30590 90.244 2.00e-22 88.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Amo17g1353 WRKY 6.9e-14 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g1353 - - aip:110268904 116.316