Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g1342 ATGGCATGGAAACACAGAAAGCTCTTCCCAGCACAAACAAACCAAACCCAAGATTGTTCTGGGTTATGTGACCCTGCATGTCCGTACAACTGTTACACCAATTACCCTGACTACTATTTTTCACCACCACCACCACCTTCTTCCACCATTTCTGACCACTCCGGCAACCACATCTCCTCCTACTTAATCATCCTCATATCGTTATTCTCTGTCATTTTCCTTCTCATCTGTCTATACGTCGTGAAACTTAAGTGCTACGCCGCCTGGTGCAGGCGGAGGCTCGTAAACGGCTCTGTCCGCACGCAGTCGGACGACGAGTTTGTCAGTGAAAATCAAATTGATCATCCGGTGTGGCTAATAGCCACGGTTGGTTTGCAACAATCCGTTATAAATTCTATAACCGCTTGCCGGTACAGAAAGGACGACGGTTTGGTTGAAGGAATAGAGTGCTCTGTTTGCTTGAACGAGTTTCAAGAAGGGGAAACGTTGAGGCTCTTGCCCAAGTGTAGTCACGCTTTTCACATTCCGTGTATTGACACGTGGCTACGCTCTCATACAAATTGTCCTCTTTGCCGAGCTCGTATTGTTTCTAACAACAATGCAAATTCTGAAACAGGAATTTCAAATTCGATCTCAGTGGGTCAAGAAAACGGTGGTAGTGGTAACGGTTTTAGAAGGAATCCGAATCAAGAGGAATCGAGAATCGAGGGTGGATTAAGCAGCGATAATATGTTTACTAATTTCGACATGGAAAACAGTCCTGGAGCAGGAGAGGTCAGCGAGTTAGTTGAAATTGAAGGAAGATTCAGTGAGGAATCGAATTCGAAGGAGCGAGTGGATTTCGATACATGTCATAGTGTTCGTGGGATTCCGACTGATGAGATACAAACGGAGATTGTAGCGAATTCAGAACCTGAAATTCACACGGCAGATCATATAGAAGATGGTGACAGAGGATGTGAAACAAAGCGTGGTTCTTCAATTGAAGAATGTTTGTATATAGGTCCGGCTTCTATGCAAAGGTCATCCTCATGCAATGGAAGGATTCTATAG 1053 0.4463 MAWKHRKLFPAQTNQTQDCSGLCDPACPYNCYTNYPDYYFSPPPPPSSTISDHSGNHISSYLIILISLFSVIFLLICLYVVKLKCYAAWCRRRLVNGSVRTQSDDEFVSENQIDHPVWLIATVGLQQSVINSITACRYRKDDGLVEGIECSVCLNEFQEGETLRLLPKCSHAFHIPCIDTWLRSHTNCPLCRARIVSNNNANSETGISNSISVGQENGGSGNGFRRNPNQEESRIEGGLSSDNMFTNFDMENSPGAGEVSELVEIEGRFSEESNSKERVDFDTCHSVRGIPTDEIQTEIVANSEPEIHTADHIEDGDRGCETKRGSSIEECLYIGPASMQRSSSCNGRIL* 351
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Amo17g1342 350 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 6 349 - -
Amo17g1342 350 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 6 349 IPR044675 -
Amo17g1342 350 SMART ring_2 150 191 IPR001841 -
Amo17g1342 350 Pfam Ring finger domain 149 192 IPR001841 -
Amo17g1342 350 MobiDBLite consensus disorder prediction 207 240 - -
Amo17g1342 350 SUPERFAMILY RING/U-box 138 198 - -
Amo17g1342 350 ProSiteProfiles Zinc finger RING-type profile. 150 192 IPR001841 -
Amo17g1342 350 CDD RING-H2_PA-TM-RING 149 192 - -
Amo17g1342 350 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 124 202 IPR013083 -
Amo17g1342 350 SMART FANCL_C_2 146 199 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Amo17g1342 Amo-Chr17 42028622 42029812 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g1342 4 196 C3H Transcription Factor Family AT1G72220 46.847 2.75e-58 192
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g1342 - - aprc:113847030 358.992
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g1342 17 42028622 42029812 Amo17g1342 17 42028622 42029812 ECH
Amo17g1342 17 42028622 42029812 Amo07g1771 07 52102989 52104105 hybridization