Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Amo17g1342 | ATGGCATGGAAACACAGAAAGCTCTTCCCAGCACAAACAAACCAAACCCAAGATTGTTCTGGGTTATGTGACCCTGCATGTCCGTACAACTGTTACACCAATTACCCTGACTACTATTTTTCACCACCACCACCACCTTCTTCCACCATTTCTGACCACTCCGGCAACCACATCTCCTCCTACTTAATCATCCTCATATCGTTATTCTCTGTCATTTTCCTTCTCATCTGTCTATACGTCGTGAAACTTAAGTGCTACGCCGCCTGGTGCAGGCGGAGGCTCGTAAACGGCTCTGTCCGCACGCAGTCGGACGACGAGTTTGTCAGTGAAAATCAAATTGATCATCCGGTGTGGCTAATAGCCACGGTTGGTTTGCAACAATCCGTTATAAATTCTATAACCGCTTGCCGGTACAGAAAGGACGACGGTTTGGTTGAAGGAATAGAGTGCTCTGTTTGCTTGAACGAGTTTCAAGAAGGGGAAACGTTGAGGCTCTTGCCCAAGTGTAGTCACGCTTTTCACATTCCGTGTATTGACACGTGGCTACGCTCTCATACAAATTGTCCTCTTTGCCGAGCTCGTATTGTTTCTAACAACAATGCAAATTCTGAAACAGGAATTTCAAATTCGATCTCAGTGGGTCAAGAAAACGGTGGTAGTGGTAACGGTTTTAGAAGGAATCCGAATCAAGAGGAATCGAGAATCGAGGGTGGATTAAGCAGCGATAATATGTTTACTAATTTCGACATGGAAAACAGTCCTGGAGCAGGAGAGGTCAGCGAGTTAGTTGAAATTGAAGGAAGATTCAGTGAGGAATCGAATTCGAAGGAGCGAGTGGATTTCGATACATGTCATAGTGTTCGTGGGATTCCGACTGATGAGATACAAACGGAGATTGTAGCGAATTCAGAACCTGAAATTCACACGGCAGATCATATAGAAGATGGTGACAGAGGATGTGAAACAAAGCGTGGTTCTTCAATTGAAGAATGTTTGTATATAGGTCCGGCTTCTATGCAAAGGTCATCCTCATGCAATGGAAGGATTCTATAG | 1053 | 0.4463 | MAWKHRKLFPAQTNQTQDCSGLCDPACPYNCYTNYPDYYFSPPPPPSSTISDHSGNHISSYLIILISLFSVIFLLICLYVVKLKCYAAWCRRRLVNGSVRTQSDDEFVSENQIDHPVWLIATVGLQQSVINSITACRYRKDDGLVEGIECSVCLNEFQEGETLRLLPKCSHAFHIPCIDTWLRSHTNCPLCRARIVSNNNANSETGISNSISVGQENGGSGNGFRRNPNQEESRIEGGLSSDNMFTNFDMENSPGAGEVSELVEIEGRFSEESNSKERVDFDTCHSVRGIPTDEIQTEIVANSEPEIHTADHIEDGDRGCETKRGSSIEECLYIGPASMQRSSSCNGRIL* | 351 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Amo17g1342 | 350 | PANTHER | TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED | 6 | 349 | - | - | |
Amo17g1342 | 350 | PANTHER | RING-H2 FINGER PROTEIN ATL51-RELATED | 6 | 349 | IPR044675 | - | |
Amo17g1342 | 350 | SMART | ring_2 | 150 | 191 | IPR001841 | - | |
Amo17g1342 | 350 | Pfam | Ring finger domain | 149 | 192 | IPR001841 | - | |
Amo17g1342 | 350 | MobiDBLite | consensus disorder prediction | 207 | 240 | - | - | |
Amo17g1342 | 350 | SUPERFAMILY | RING/U-box | 138 | 198 | - | - | |
Amo17g1342 | 350 | ProSiteProfiles | Zinc finger RING-type profile. | 150 | 192 | IPR001841 | - | |
Amo17g1342 | 350 | CDD | RING-H2_PA-TM-RING | 149 | 192 | - | - | |
Amo17g1342 | 350 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 124 | 202 | IPR013083 | - | |
Amo17g1342 | 350 | SMART | FANCL_C_2 | 146 | 199 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Amo17g1342 | Amo-Chr17 | 42028622 | 42029812 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Amo17g1342 | 4 | 196 | C3H Transcription Factor Family | AT1G72220 | 46.847 | 2.75e-58 | 192 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Amo17g1342 | - | - | aprc:113847030 | 358.992 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Amo17g1342 | 17 | 42028622 | 42029812 | Amo17g1342 | 17 | 42028622 | 42029812 | ECH | |
Amo17g1342 | 17 | 42028622 | 42029812 | Amo07g1771 | 07 | 52102989 | 52104105 | hybridization |