LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo17g1340	ATGCATAGAGTAAGCAAAGTTCCCGATGGAAGGAAAGAAAATGCTAGAGGCCCATGGCATTTTATTAGCCTTATGCCCCTCTTTGACCCACCTAGGCATGATAGTGCCGAAACAATATGGAGGGCACTATATCTCGGAGTAAATGTCAAAATGATTACAGGTGATCAACTAGCTATAGGAAAGAAAACAGGACGACGCTTGGGAATGGGTACCAATATGTACCCTTCATCTGCTTTACTTGAACAGGACAAGGATGAATCTATTGCTGCCTTGCCTATTGATGAACTAATCGAAAAAGCAGATGAATTTGCTGATGTATTTCCTGATATGTCTCGATACTATCCCGGGGACTTCATGTGTACTCGAATAAGTATTAATATGATTGTTGTTTTATATTTTTTGTCAGAACACAAGTATGAGCTTGTGAAGCATTTGCAAGTGAGGAAACATATCTGTGGAATGACTGGTGATGGAGTGAATGATGCACCTACTCTAAAGAAGGCAGACATTGGTATAGCTGTCGCCGATGCCACAGATGCTGCTCGTAGTGCATCTGATATTGTTTTAGTAATAGGATGA	579	0.4076	MHRVSKVPDGRKENARGPWHFISLMPLFDPPRHDSAETIWRALYLGVNVKMITGDQLAIGKKTGRRLGMGTNMYPSSALLEQDKDESIAALPIDELIEKADEFADVFPDMSRYYPGDFMCTRISINMIVVLYFLSEHKYELVKHLQVRKHICGMTGDGVNDAPTLKKADIGIAVADATDAARSASDIVLVIG*	193

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo17g1340	192	Pfam	haloacid dehalogenase-like hydrolase	82	188	-	-
	Amo17g1340	192	PRINTS	H+-transporting ATPase (proton pump) signature	127	143	IPR001757	GO:0005215\|GO:0005524\|GO:0016021\|GO:0016887
	Amo17g1340	192	PRINTS	H+-transporting ATPase (proton pump) signature	155	171	IPR001757	GO:0005215\|GO:0005524\|GO:0016021\|GO:0016887
	Amo17g1340	192	PANTHER	PLASMA MEMBRANE ATPASE	6	189	-	-
	Amo17g1340	192	PANTHER	CALCIUM-TRANSPORTING ATPASE	6	189	-	-
	Amo17g1340	192	SUPERFAMILY	HAD-like	21	189	IPR036412	-
	Amo17g1340	192	PRINTS	P-type cation-transporting ATPase superfamily signature	155	174	-	-
	Amo17g1340	192	PRINTS	P-type cation-transporting ATPase superfamily signature	45	55	-	-
	Amo17g1340	192	PRINTS	P-type cation-transporting ATPase superfamily signature	178	190	-	-
	Amo17g1340	192	PRINTS	P-type cation-transporting ATPase superfamily signature	23	34	-	-
	Amo17g1340	192	Gene3D	-	6	28	IPR023299	GO:0000166
	Amo17g1340	192	Gene3D	-	135	190	IPR023214	-
	Amo17g1340	192	Gene3D	-	29	109	IPR023214	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo17g1340	Amo-Chr17	41953758	41954776	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo17g1340	7	189	Primary Pumps ATPases	AT3G47950	73.770	1.22e-84	266

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo17g1340	K01535		-	aip:107626951	319.701