Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g1331 ATGAAGCTTCTACATCTTCCGAACCCTATCCTCCCTCCAGAGACACCAGATCCATCTCTACGTTCACGCTATTCTCCAATGGAACAAGTCAAAGACGCCGACGAAGTCATGGAGAGGCACATCGAGGACTCGCTCGAGATCCTCCCTCCTCTTAGGAATTGCTACCGCACGCGCTGTGGCAGCGCGCTGTCACATGAGAAGCTTAGCCTCGTGGATGTTGGAACAGGTGCTGGTATTCCTGGAGTTGTTTTTGCCATAGCTTGTCTAGAATGGAAAGTTACGCTGATGGAGTCCATGAACAAGAGATGCGTATTCTTGGAGCATGTTGTTGGAATCATCGGTTCATCAACTATCCAGATAATAAGAGAAAGAGCAGAGGATGCTTTTGGTGATGCTGCTCTTGAACTTGGTAAATTGCTGAAGCCACAATTAATGAAGGGAAACATGCAACTTTACTCCATGGATCAACAGTGTAGTCAGGCTCTTGAAGCTCATGCTGCATCCTTTGCTCAATTTAAGGATATGAGGCAGCAAACCAATGAAACTGGAGAAGTTACTACACCAATTATAGTAAGATCTCATGTTGCTACTGAGGAGCATGTGAAAGAAGCAATAAGGCTTTTCACCGTGTCTACAATGGATGCTGCTCGGTCTGGAATACACCAACAAATCAGTCTCACACCAGAAATGGAAAATGAAATAAAGAAGAAGGATAATTTCAAGAATCCATTGTATATAGAGAATCTGATGGAGGAATATGTCACCAGCTTCTGGGTTGATGAGACCTTGCTTTCTGATTGGAAGCAGCAGCTAGAGCATGAAGTCGAGACTATGAAAGCTCAGTCTAATGTTGTCAGCATCCACACGAGGTATGTTGTGAACGGTATGTCATATGTTGCACCAAATACACCACTGAAGCCAGCTGACTACTTCAACATCACTGGAGTTTTCTCTGTTGGGACCATCCCTACCAGCCCTTCAAGGGGCACTAATAATGCCTACTTCCAAACGTTCAGTAGTGGAAGGTGGACACCTCAAAGTAGAGCACATTACAATTTTAGAGATGCTGTGTACCCTAAGTCATGGACAGCAATATACGTGGCACTAGACAATGTGGGAATGTGGAACCTAAGGTCTGAGAATTGGAGAATTGGGTATATCAAGTGA 1167 0.4456 MKLLHLPNPILPPETPDPSLRSRYSPMEQVKDADEVMERHIEDSLEILPPLRNCYRTRCGSALSHEKLSLVDVGTGAGIPGVVFAIACLEWKVTLMESMNKRCVFLEHVVGIIGSSTIQIIRERAEDAFGDAALELGKLLKPQLMKGNMQLYSMDQQCSQALEAHAASFAQFKDMRQQTNETGEVTTPIIVRSHVATEEHVKEAIRLFTVSTMDAARSGIHQQISLTPEMENEIKKKDNFKNPLYIENLMEEYVTSFWVDETLLSDWKQQLEHEVETMKAQSNVVSIHTRYVVNGMSYVAPNTPLKPADYFNITGVFSVGTIPTSPSRGTNNAYFQTFSSGRWTPQSRAHYNFRDAVYPKSWTAIYVALDNVGMWNLRSENWRIGYIK* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g1331 388 Hamap Ribosomal RNA small subunit methyltransferase G [rsmG]. 3 221 IPR003682 GO:0005737|GO:0006364|GO:0008649
Amo17g1331 388 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASES SUPERFAMILY PROTEIN 30 128 IPR003682 GO:0005737|GO:0006364|GO:0008649
Amo17g1331 388 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 31 128 IPR029063 -
Amo17g1331 388 SUPERFAMILY Clathrin heavy-chain terminal domain 141 175 IPR016025 GO:0005198|GO:0006886|GO:0016192|GO:0030130|GO:0030132
Amo17g1331 388 Gene3D Vaccinia Virus protein VP39 27 197 IPR029063 -
Amo17g1331 388 Pfam rRNA small subunit methyltransferase G 29 127 IPR003682 GO:0005737|GO:0006364|GO:0008649
Amo17g1331 388 MobiDBLite consensus disorder prediction 1 23 - -
Amo17g1331 388 SUPERFAMILY Cupredoxins 289 382 IPR008972 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g1331 Amo-Chr17 41374442 41380405 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g1331 157 238 Core DNA Replication Machinery Family AT2G07690 41.509 3.14e-12 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g1331 K03501 - adu:110273598 188.734