Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g1325 ATGGCTACAAACAGGTTCTTGTGTGAAACCTGTGGGAAGGGTTTCCAAAGGGATCAAAACCTTCAACTCCATAGAAGAGGACACAACCTTCCATGGAAGCTAAAACAAAGAACAAATAAAGAACCAAAGAAGCGTGTATACGTGTGTCCGGAGAAAACATGTGTCCACAACCACCCTTCAAGGGCTTTGGGAGACTTGACCGGAATCAAGAAGCACTTTTGCCGGAAGCACGGCGAGAAGAAGTGGAAGTGCGACAAATGCTCGAAGCGTTACGCGGTTCAGTCCGATTGGAAAGCCCACTCCAAAACCTGTGGTACAAGAGAATACAAGTGTGATTGTGGAACCATCTTTTCACGGAGGGATAGCTTCATAACTCACAGGGCATTTTGTGATGCATTGGCAGAAGAAACAGCTAGGGTAAATGCAGCATCAAGCATAAACAACTCAACATTAGGGGCTAATAATAATAGCAATAACATTATTGGTTACAATAACATGATAGGAACCTCCATGGCCCCTCATCATAATAATAATAATAACATGGCAACCCAATTTGCTTCAATTTGCAATAAGCCAATTCCATTCCCTGAAGAAGCCAGAAATAACCAAACAACAACAAGAGGATTATCCCTTTGGATGGACCATCATCATCATCATCGTCAAGAAGCAACGATGGCCACTAATAACAATAATTACCATCTGAACTGGGTATTCGGATCGAAAATTTCGACCAATCCAAGCCAAGATCTAAGTAGCGATACTACTATTACTAGTACTACTACTACATCGCTTCCAATACTAGGAAGCATTGTTAGTGTTCCTTCATTGTATAGCTCACAACATCAACCCCATCAAACATGTGCTTCTTCTTCGTCGGCAAACATGTCGGCGACGGCATTGTTGCAGAAAGCCGCTCAAGTTGGTGCAACCTCAAGTGATCCATCATCATTCTTGGAGGCATTAGGGTTGAAATGCAGCAATGGTAGTGGTCAAGGGCAAGATGGGAATAACAATAAGTTTTGTGGGGTGTATGGTTCAAGTTTGGTGCTAACAAGTAGTAGTAATAMTATTAATACAGAGCCAGAGAACAATGAATTGTCACAAATGCTCCCTTCAAAGAGGAGACATGTAATGCCGAATGAGGAGAGTGGAGGAGGGCAAACTAGGGATTTCCTTGGTGTTGGGGGTGCAAACCACCATTTGCCACCCTTCATCAACCAAAGCTTGGATTTGATTTGA 1239 0.4278 MATNRFLCETCGKGFQRDQNLQLHRRGHNLPWKLKQRTNKEPKKRVYVCPEKTCVHNHPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEETARVNAASSINNSTLGANNNSNNIIGYNNMIGTSMAPHHNNNNNMATQFASICNKPIPFPEEARNNQTTTRGLSLWMDHHHHHRQEATMATNNNNYHLNWVFGSKISTNPSQDLSSDTTITSTTTTSLPILGSIVSVPSLYSSQHQPHQTCASSSSANMSATALLQKAAQVGATSSDPSSFLEALGLKCSNGSGQGQDGNNNKFCGVYGSSLVLTSSSNXINTEPENNELSQMLPSKRRHVMPNEESGGGQTRDFLGVGGANHHLPPFINQSLDLI* 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g1325 412 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 28 IPR013087 -
Amo17g1325 412 Gene3D Classic Zinc Finger 2 29 - -
Amo17g1325 412 PANTHER F-BOX ASSOCIATED PROTEIN 1 411 - -
Amo17g1325 412 SUPERFAMILY beta-beta-alpha zinc fingers 5 102 IPR036236 -
Amo17g1325 412 Gene3D Classic Zinc Finger 39 130 - -
Amo17g1325 412 MobiDBLite consensus disorder prediction 376 395 - -
Amo17g1325 412 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Amo17g1325 412 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g1325 Amo-Chr17 41034635 41037309 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g1325 1 395 IDZ Gene Family AT1G03840 51.382 2.94e-123 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo17g1325 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g1325 K25870 - ahf:112767274 784.252