Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g1311 ATGAGAAGGTTCACGTGGTTTACGCCGTATTGCCGCCGTTTGCTCTCTTTTGCGTTTTCAGAACCTGTCGTCCATAGAGGACACTGCTTCACCGAATTATTGCCTTTTCGCCAATCGCCGTTTCTCAGTCGAGCTTTGTTCAATCGCAGTAATGTCCCAAAATCGGAGGAGTTTCTGAGTTTGAGTAAACCATTGAGATATCGATATATTCATGATGCAGCATTTTCGACATTGGTTGAGCAGGATTATTATCAAGTTCTTGGCATTTCTGAGAACGCCACTCAGGATGAGATAAAGAAGGCGTTTCTGTTGCTTGCTAAAAAGTACCATCCAGATGCAAATAAGAATAATCCATCTGCAAAGAGGAAATTTCAAGATATAAGAGAAGCTTATGAGACGTTGAGAGATTCTAAAAAGAGGGCCCAATATGACAAGATGAAGATGCAAAGCCGTGGTTCACAGAACATAGAATATGACGACCACAATGATGATTTTGCAGAAAGGTTTCAAAATGCGAAAGAAAGGTTTCAAAATGGTTTTCACCATGAGTTTTCTTCTTCATTTCATACAGTATTCTCTGAGCTATTTGAAGAAGAAATCACTCATTCTTCATCAAGTATAGAGGTGGAGTTGTCCCTTACTTTCTCAGAAGCTGCAAGAGGGTGCACTAAACATGTGTCATTTGATGCATTCGTTCCATGTGATTATTGCGATGGGAGAGGGTATCCACCACGTGCGAAGGCTAAAGTTTGTCCAACATGCCGGGGCTTAGGTCGAGTAACAATACCTCCATTTACATCAACATGCATTACCTGTAAAGGATCAGGTCGCGTCATTAAGGATTTCTGTACGTCATGTAGAGGATCTGGGGTGGTTGAAGGGATTAAAGAGGTTAAAGTTACAATACCAGCAGGTGTGGATACTGGAGATACAATCCATGTGCCAGAGGCCGGGAATGCTGTTAAAAGTGGAGCTCGACCTGGGAGTTTATACATCAAAATCAAGGTTGCCGAGGATTCAGTCTTTGCCAGGGATGGTGCAGATATCTATGTGGACTCTAATATTAGCTTTACGCAGGCTATTCTTGGTGGCAAAGTTGATGTGCCTACTCTATCTGGGAAGATGCAAGTAAAGATACCCAAGGGTGTTCAACCAGGGCAGCTACTAGTATTACGAGGAAAAGGACTACCAAAGCATGGTTATCTTGTACATCATGGGGATCAGTATGTGCGTTTTCGTATTAACTTCCCCACTAAAATTAATGAACGACAACGTGCTATACTTGAAGAACTAGCAGAGGAGGAAATAAAGCAGGAAAACCACTCAACATTTGAAGGAAACTGGCTTTACCAGCAGCTATGTACTGGTTGA 1371 0.4216 MRRFTWFTPYCRRLLSFAFSEPVVHRGHCFTELLPFRQSPFLSRALFNRSNVPKSEEFLSLSKPLRYRYIHDAAFSTLVEQDYYQVLGISENATQDEIKKAFLLLAKKYHPDANKNNPSAKRKFQDIREAYETLRDSKKRAQYDKMKMQSRGSQNIEYDDHNDDFAERFQNAKERFQNGFHHEFSSSFHTVFSELFEEEITHSSSSIEVELSLTFSEAARGCTKHVSFDAFVPCDYCDGRGYPPRAKAKVCPTCRGLGRVTIPPFTSTCITCKGSGRVIKDFCTSCRGSGVVEGIKEVKVTIPAGVDTGDTIHVPEAGNAVKSGARPGSLYIKIKVAEDSVFARDGADIYVDSNISFTQAILGGKVDVPTLSGKMQVKIPKGVQPGQLLVLRGKGLPKHGYLVHHGDQYVRFRINFPTKINERQRAILEELAEEEIKQENHSTFEGNWLYQQLCTG* 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g1311 456 CDD DnaJ 82 136 IPR001623 -
Amo17g1311 456 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 45 450 - -
Amo17g1311 456 Pfam DnaJ central domain 234 290 IPR001305 GO:0031072|GO:0051082
Amo17g1311 456 Gene3D - 230 263 - -
Amo17g1311 456 Gene3D - 264 297 - -
Amo17g1311 456 ProSiteProfiles dnaJ domain profile. 82 147 IPR001623 -
Amo17g1311 456 SUPERFAMILY Chaperone J-domain 81 167 IPR036869 -
Amo17g1311 456 SMART dnaj_3 81 139 IPR001623 -
Amo17g1311 456 ProSitePatterns Nt-dnaJ domain signature. 124 143 IPR018253 -
Amo17g1311 456 CDD DnaJ_zf 234 290 IPR001305 GO:0031072|GO:0051082
Amo17g1311 456 Gene3D - 337 446 - -
Amo17g1311 456 ProSiteProfiles Zinc finger CR-type profile. 221 295 IPR001305 GO:0031072|GO:0051082
Amo17g1311 456 PRINTS DnaJ domain signature 139 158 IPR001623 -
Amo17g1311 456 PRINTS DnaJ domain signature 102 117 IPR001623 -
Amo17g1311 456 PRINTS DnaJ domain signature 119 139 IPR001623 -
Amo17g1311 456 PRINTS DnaJ domain signature 84 102 IPR001623 -
Amo17g1311 456 Gene3D DnaJ domain 79 205 IPR036869 -
Amo17g1311 456 CDD DnaJ_C 205 420 - -
Amo17g1311 456 Hamap Chaperone protein DnaJ [dnaJ]. 79 439 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Amo17g1311 456 PANTHER CHAPERONE PROTEIN DNAJ 1, MITOCHONDRIAL 45 450 - -
Amo17g1311 456 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 221 292 IPR036410 -
Amo17g1311 456 Pfam DnaJ domain 82 144 IPR001623 -
Amo17g1311 456 Gene3D - 206 335 - -
Amo17g1311 456 SUPERFAMILY HSP40/DnaJ peptide-binding domain 341 428 IPR008971 GO:0006457|GO:0051082
Amo17g1311 456 Pfam DnaJ C terminal domain 207 417 IPR002939 -
Amo17g1311 456 SUPERFAMILY HSP40/DnaJ peptide-binding domain 207 337 IPR008971 GO:0006457|GO:0051082
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g1311 Amo-Chr17 40407896 40422096 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g1311 83 149 C2H2 Transcription Factor Family AT1G74250 40.278 1.92e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g1311 - - aip:107622493 865.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g1311 17 40407896 40422096 Amo17g1311 17 40407896 40422096 ECH
Amo17g1311 17 40407896 40422096 Amo07g1802 07 53141353 53151425 hybridization