Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g1276 AGGAAAAAAAAAAGGAAGACTGGAGAGGCAGCGCATGGGGTGTGTAAAGTGAAGAAGAAGCAAAGAAAGAAATGTGGAGAGAGCTGGGAGAAGTGGAAGGATCATATTCATAAAGCTCGTAAGTCGCAAGTTGAAGTTGGCGGAGTTACAGGTTTGCAGCCTGAGCTTCAAACTGCTGCTGCTGATTCCTTCTCAGATCATCCTCTTCATCGCCTCCAGACATGTGCTGCAAATGCAAATGAAAAAGGTGACAAGGCTTCCTTGATTCCTCACTCCAGACGGCCTGCACTCCCCTCTCTGCAAATACCCCCATGGTCACTAGATGCCGCATTATCTTCTTTCGCAAAGACGGATGGTCCTTCCCTCTCCAGTCCCATTTCTGCTTCCACATCCACCTCTTCTAGAGGACTTCCGCCAAGGCCAAATTCGGCCAGAGTCAGGCCTTCCATGAGAAGTATAATTCCTCAAGGGAACTTCAGGGCCAGAACCAGTCCCCGCGATGCTGAAAGGACGGTTCTCATTGTTCCTGATACTACCCTGTCAAATGCACTTTTGGATAAGCCTTCTACTTCAAGGACCCTCTCTCTTAATGGTAAAGGTTCATTCTCTCCATTGTCAAAGGTTGCCCACTCATTACCGGTTACTCCAATTGCATCTTTGGGTCAAGAAAGTGTACATGGCAGACATCTGGGATGTGCTTCTGATTTAAATACAATGGTTGTCAAGCAGCATATAACTCGATCACTTTCGGTTCCAGTTGATGCCAAAGCCACCAAATTGAGGTGCACTCAGTCTAGGGTCTTGATTCGTATCATTTCAGCCAGGCGGCATCTTGCAACTGTTGATGGAACTTCAACTGGTGATGCTTCAGTCATGGAGATTGCTATTGAGGATGCTACAGCAGATATTCCAGAGGAAGAAGCAGTTTGTAGGATTTGTTTGGCAGAGCTCGGGGAAGGAGAAAATACGCTTAAGATGGAATGCAGTTGTAAAGGTGATCTTGCGCTTGCTCATCAAGACTGTGCAGTAAAGTGGTTTAGTATTAAGGGCAACAGGACCTGTGATGTCTGCAAGCAGGATGTTCAAAACCTCCCGGTAACACTATTGAAAATTTATGATCGTCAACCCCCTGCCAGACAGCCATCAAATGTGCCACAACCAAGGGAAATAGCTTATTACAGGATCTGGAATGATATACCTGTACTTGTCTTGATTAGCATGCTTGCTTACTTCTGCTTTTTGGAGCAACTACTGGTTTCAGATTTGGGTCCTCGAGCTCTTGCAATTGCGTTACCTTTCTCCTGTGTTTTGGGTCTCCTAACATCTATGATTGCGTCAACCATGGTGAGCAGGAGTTACGTATGGGCTTATGCTTGCTTCCAGTTCGCAATTCTCATCTTGTTTGCTCACGTATTTTTTAATATGCTTAATGTCAATCCAATTCTGTCGATCCTTCTTTCCTCATTCATTGGATTCGGGATGACAATAAGCATGAATTGTCTCCTTTCGGAATATGTTAGATGGAGAGCAAATAGGCAGAATCAAACACCCAATGAGAATGGTAACAGTCTAGAGCAGCAGCATCAAGAACAAATAGAGCAACAAGAGCAACATCGATGA 1620 0.4506 RKKKRKTGEAAHGVCKVKKKQRKKCGESWEKWKDHIHKARKSQVEVGGVTGLQPELQTAAADSFSDHPLHRLQTCAANANEKGDKASLIPHSRRPALPSLQIPPWSLDAALSSFAKTDGPSLSSPISASTSTSSRGLPPRPNSARVRPSMRSIIPQGNFRARTSPRDAERTVLIVPDTTLSNALLDKPSTSRTLSLNGKGSFSPLSKVAHSLPVTPIASLGQESVHGRHLGCASDLNTMVVKQHITRSLSVPVDAKATKLRCTQSRVLIRIISARRHLATVDGTSTGDASVMEIAIEDATADIPEEEAVCRICLAELGEGENTLKMECSCKGDLALAHQDCAVKWFSIKGNRTCDVCKQDVQNLPVTLLKIYDRQPPARQPSNVPQPREIAYYRIWNDIPVLVLISMLAYFCFLEQLLVSDLGPRALAIALPFSCVLGLLTSMIASTMVSRSYVWAYACFQFAILILFAHVFFNMLNVNPILSILLSSFIGFGMTISMNCLLSEYVRWRANRQNQTPNENGNSLEQQHQEQIEQQEQHR* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g1276 539 ProSiteProfiles Zinc finger RING-CH-type profile. 302 364 IPR011016 GO:0008270
Amo17g1276 539 MobiDBLite consensus disorder prediction 118 151 - -
Amo17g1276 539 CDD RING_CH-C4HC3_MARCH 310 358 - -
Amo17g1276 539 PANTHER OS02G0165000 PROTEIN 71 536 - -
Amo17g1276 539 SUPERFAMILY RING/U-box 306 361 - -
Amo17g1276 539 SMART ringv_2 309 358 IPR011016 GO:0008270
Amo17g1276 539 MobiDBLite consensus disorder prediction 118 139 - -
Amo17g1276 539 PANTHER OS02G0165000 PROTEIN 71 536 - -
Amo17g1276 539 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 296 365 IPR013083 -
Amo17g1276 539 MobiDBLite consensus disorder prediction 516 530 - -
Amo17g1276 539 Pfam RING-variant domain 310 357 IPR011016 GO:0008270
Amo17g1276 539 MobiDBLite consensus disorder prediction 516 539 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g1276 Amo-Chr17 37865547 37870300 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g1276 293 364 C3H Transcription Factor Family AT2G37950 46.575 9.11e-13 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g1276 - - ahf:112765571 1011.91