Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g1260 ATGATGTGGGAATGGGAAGAATTAGACGACGCCGTTCCGCAAAACGACCAGCCTGATACCGATTCCTACCTCAACTTCGATCTCTTCTCTGCTCTCTCTAAGCCCAAGGATTATTATAAGATATTGGAAGTGGATTACGATGCTACGGATGATGCTATTCGTTCTAATTACATTCGTCTAGCTCTGAAATGGCACCCAGACAAGCAGAAAGACCAAGGTGCTGCCACCACGCGGTTCCAGGAGATAAACGAGGCTTATCAGGTTTTGAGTGATCCTGTAAAGAGGAGAGAATATGACAGGAATGGGATGCTTTACGCTTATGATTATGATATCATTGATTATCTTAACCGCTACAAGGGCCTTATATTGACTTGCAACGGTCTTGGAATGAAGCATTCTATATGGTAA 408 0.4338 MMWEWEELDDAVPQNDQPDTDSYLNFDLFSALSKPKDYYKILEVDYDATDDAIRSNYIRLALKWHPDKQKDQGAATTRFQEINEAYQVLSDPVKRREYDRNGMLYAYDYDIIDYLNRYKGLILTCNGLGMKHSIW* 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g1260 135 PRINTS DnaJ domain signature 39 57 IPR001623 -
Amo17g1260 135 PRINTS DnaJ domain signature 57 72 IPR001623 -
Amo17g1260 135 PRINTS DnaJ domain signature 74 94 IPR001623 -
Amo17g1260 135 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 2 135 - -
Amo17g1260 135 ProSitePatterns Nt-dnaJ domain signature. 79 98 IPR018253 -
Amo17g1260 135 Pfam DnaJ domain 37 99 IPR001623 -
Amo17g1260 135 ProSiteProfiles dnaJ domain profile. 37 102 IPR001623 -
Amo17g1260 135 SMART dnaj_3 36 94 IPR001623 -
Amo17g1260 135 CDD DnaJ 37 91 IPR001623 -
Amo17g1260 135 Gene3D DnaJ domain 29 111 IPR036869 -
Amo17g1260 135 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 2 135 - -
Amo17g1260 135 SUPERFAMILY Chaperone J-domain 33 122 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g1260 Amo-Chr17 37433318 37438065 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g1260 30 106 C2H2 Transcription Factor Family AT1G74250 41.667 2.10e-12 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g1260 - - var:108338470 240.736