Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g1240 ATGCTTCCTTTTGGGGGCAGATTCTACGGGTTCGAGAGCTGGCTAGACCAACCTCACCAACACGACTCATCACCCTCTGATGGATTTTTTGTTCCCGAAGCACCTTTCAAGGCAACGGATCTATTATTCGACGGAGCAGGCAGATCATCCAAACTGGATAATAATAGGAAATCAACGGAAGCCTGCAAGAGCCACAGGGAAGCCGAGAGGAGGCGCAGGCAGCGAATCAACGCTCATCTTTCCACCCTTCGCTCCCTCCTCCCTAACACCGCCAAGGCAGATAAGGCGTCGTTGCTGGCGGAAGTGGTAAAGCACGTGAAGCGGCTAAAGAAAGAGGCCGATGACGTGGCACGAGACCCGTCCAAACCCGACGCCGAAGCAGAACCGTGGCCGTTTCCGGGAGAATCCGACGAGGCAACACTCAGCTACTGCGACGGAGAACCGAACCTGGTGAAGGCGACGCTGTGCTGCGAGGACCGGCCCGGTCTGAACCGGGACCTGACGCATGCGATTCGGTCAGTTCGAGCGAAAGCGGTTCGGGCCGAGATGATGACGGTTGGGGGCCGGACCAAGAGTGCGGTGGTAATTCAATGGCCAGCAGCGTCTGGTGGTGGTGATTCAAAAGAAGGGGTGGAGGTTGGAGCTCTGGAACGGGCATTGAAGGCAGTTATTGAGAATCGGGCTTTAGTGGGATCTGGGATGGGCCGCTTCGTGTTGGGTCAGAAGCGGGCTTGGAATAGTTATGATTCCCCTGATGAGGTTGATTGCACCTTTTTGCTTAACAGAGATGCTAGCAAGTAA 801 0.5556 MLPFGGRFYGFESWLDQPHQHDSSPSDGFFVPEAPFKATDLLFDGAGRSSKLDNNRKSTEACKSHREAERRRRQRINAHLSTLRSLLPNTAKADKASLLAEVVKHVKRLKKEADDVARDPSKPDAEAEPWPFPGESDEATLSYCDGEPNLVKATLCCEDRPGLNRDLTHAIRSVRAKAVRAEMMTVGGRTKSAVVIQWPAASGGGDSKEGVEVGALERALKAVIENRALVGSGMGRFVLGQKRAWNSYDSPDEVDCTFLLNRDASK* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g1240 266 MobiDBLite consensus disorder prediction 50 71 - -
Amo17g1240 266 MobiDBLite consensus disorder prediction 47 71 - -
Amo17g1240 266 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 63 119 IPR036638 GO:0046983
Amo17g1240 266 PANTHER TRANSCRIPTION FACTOR BHLH30 52 245 IPR045847 GO:0003700|GO:0006355
Amo17g1240 266 Pfam Helix-loop-helix DNA-binding domain 62 109 IPR011598 GO:0046983
Amo17g1240 266 MobiDBLite consensus disorder prediction 112 133 - -
Amo17g1240 266 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 60 109 IPR011598 GO:0046983
Amo17g1240 266 PANTHER OS09G0463900 PROTEIN 52 245 - -
Amo17g1240 266 Gene3D - 54 117 IPR036638 GO:0046983
Amo17g1240 266 Coils Coil 99 119 - -
Amo17g1240 266 SMART finulus 66 115 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g1240 Amo-Chr17 36491696 36493415 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g1240 57 225 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 45.402 8.25e-34 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo17g1240 HLH 9.6e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g1240 - - aip:107608273 523.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g1240 17 36491696 36493415 Amo17g1240 17 36491696 36493415 ECH