Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g1231 ATGCAAACGGCAACGAGAGCAGAAGCCGAACGTCTACTCGGGATCGCAGAAAAGCTCCTGCACACCCGCGATCTCAACGGCTCCCGCGAATTCGCCATCCTCGCCCAAGAAACCGAACCTCTTCTAGAAGGTTCCGACCAGATCCTCGCCATCGTCGACGTCCTCTTAGCCGCTGATAACCGTCCAAACGCCGCCACCAGCCACCCCCACCACCACCAACTCGATTGGTACGGCATCCTCCAGGTGGACCGCCGCACCAACGACCTCGACCTCATCAAGCGCAACTACCGCCGCCTCGCTCTCCTCCTCCACCCTGACAAGAGCCGCTTTGCGTACGCCGACCACGCCTTTAAGCTCGTCGCCGACGCCTGGGCGGTGCTCTCGGACCCAATCAAGAAGTCCAACTACGACAAGGAGCTCTCTTTCTTCTCCCGAGTCGACCTCTCCGTTCCCGGCTGGGTCCAGCAAGACAAGCTCCCGGTCCGTAGAACGGGACCTGGGCCTGGTCCAGGGCCAGGCCCAAGCGCCAGGACAAATAATAACAGTAACACCATAAGCTTCGACGGGATGAATATCAGCATGACTAATAACACGCCTGCGTCCGCCGCGAGGAACGAGATTGCGGTGGACGAGAATTCGAACCCGAGGCAGCGGCAGGGGCAAAACAGATCGGGAAATTTCTGGACCGCGTGTCCGTACTGCTATAGGTTGTATGAGTACCCTAGGGTTTACGAGGGATGCTGCTTGAGGTGCCAGAATTGTGACAGGTCCTTCCATGGGATCTCGATTCCTTCGCTGCCCCCACTGGTGCCGGGGCAGGATGCCTATTACTGCTGCTGGGGGTTCTTTCCGATGGGGTTTGTGGTTGGGAATGTGGGATCTGCGGAGAAAGAGCCTGCGCCGGCGCCGGTTCCAGTCACGGTTGCAGCTCCACAGTCTGCGTCGTCACTTCCGAATTGGATGCCTGCCGCGGCTGTTCAGGAGAATGGGGGAAATGTTTCTGTGCCGGTTGCAGCGCCGACGCCTGCTAGGGTGGCTGCCAGAGGAAGTATTTCGAATGGAGTTGCTGGATCTGGGCCGAGGAAGCGAGGAAGGCCTCGGAAGTATCCGTTGCAGTCATGA 1122 0.5909 MQTATRAEAERLLGIAEKLLHTRDLNGSREFAILAQETEPLLEGSDQILAIVDVLLAADNRPNAATSHPHHHQLDWYGILQVDRRTNDLDLIKRNYRRLALLLHPDKSRFAYADHAFKLVADAWAVLSDPIKKSNYDKELSFFSRVDLSVPGWVQQDKLPVRRTGPGPGPGPGPSARTNNNSNTISFDGMNISMTNNTPASAARNEIAVDENSNPRQRQGQNRSGNFWTACPYCYRLYEYPRVYEGCCLRCQNCDRSFHGISIPSLPPLVPGQDAYYCCWGFFPMGFVVGNVGSAEKEPAPAPVPVTVAAPQSASSLPNWMPAAAVQENGGNVSVPVAAPTPARVAARGSISNGVAGSGPRKRGRPRKYPLQS* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g1231 373 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 3 333 - -
Amo17g1231 373 MobiDBLite consensus disorder prediction 348 373 - -
Amo17g1231 373 Pfam DnaJ domain 75 137 IPR001623 -
Amo17g1231 373 SMART dnaj_3 74 132 IPR001623 -
Amo17g1231 373 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 3 333 - -
Amo17g1231 373 SUPERFAMILY Chaperone J-domain 67 140 IPR036869 -
Amo17g1231 373 MobiDBLite consensus disorder prediction 174 190 - -
Amo17g1231 373 MobiDBLite consensus disorder prediction 157 190 - -
Amo17g1231 373 CDD DnaJ 75 129 IPR001623 -
Amo17g1231 373 ProSitePatterns Nt-dnaJ domain signature. 117 136 IPR018253 -
Amo17g1231 373 Gene3D DnaJ domain 62 147 IPR036869 -
Amo17g1231 373 ProSiteProfiles dnaJ domain profile. 75 140 IPR001623 -
Amo17g1231 373 PRINTS DnaJ domain signature 77 95 IPR001623 -
Amo17g1231 373 PRINTS DnaJ domain signature 96 111 IPR001623 -
Amo17g1231 373 PRINTS DnaJ domain signature 112 132 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g1231 Amo-Chr17 36102530 36103981 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g1231 223 371 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 46.584 2.56e-40 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g1231 - - adu:107459359 706.442
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g1231 17 36102530 36103981 Amo17g1231 17 36102530 36103981 ECH
Amo17g1231 17 36102530 36103981 Amo07g1843 07 55217481 55219354 hybridization