Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g1222 ATGGTGAGGCAGAAGATCAAGATAAAGATGATAGACAACATAACAGCAAGACAAGTAACGTTTTCAAAGAGGAGAAGAGGGATCTTCAAGAAAGCACAAGAGCTTTCTGTGCTTTGTGATGCTGAGGTTGCTCTCATCATTTTCTCTGCCACTGGGAGGCTCTTTGAATATGCTAGCTCCAGTATGAAGGACATAACTGCAAGGTATGCTCAGCATACACATGAGATAAGTAGATCAGAAAGACCTCTTGAACTGCAGCTGGAGAATGTCAATAACGATAAATTACGTAAGGAAGTTGCTGATAAAACCCACCAACTAAGGCAGATGAAAGGTGAAGATTTTCAAGGGCTGAACCTACAAGACTTACTACAACTGGAGAAAGCACTTCAAACAGGATTAAATCGCGTGATTGAGACAAAGGAAAAGCGGATCATGGATGACATCGCAGCACTTCAGAAAAAGGGCGCCGAATTGGAACAAGAGAACAAGAAGTTAAAGCAAAAGATGGATATGGTGAAGATGGGAAAAAGTCCATTAGTGATGGATTCATCGGATATTGGCATGCAAGAAGTGGTGTCATCCGAGTCACTAAATAATGCATGCAGCTGCATCAGTAGTGCCGCTCCTTCTTCTCTTGAAGATGATTCCTCTGACACTTCTCTTAAGTTAGGGTTGCCCTTTCCTAATAATTGA 693 0.4185 MVRQKIKIKMIDNITARQVTFSKRRRGIFKKAQELSVLCDAEVALIIFSATGRLFEYASSSMKDITARYAQHTHEISRSERPLELQLENVNNDKLRKEVADKTHQLRQMKGEDFQGLNLQDLLQLEKALQTGLNRVIETKEKRIMDDIAALQKKGAELEQENKKLKQKMDMVKMGKSPLVMDSSDIGMQEVVSSESLNNACSCISSAAPSSLEDDSSDTSLKLGLPFPNN* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g1222 230 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Amo17g1222 230 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Amo17g1222 230 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Amo17g1222 230 Coils Coil 92 112 - -
Amo17g1222 230 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Amo17g1222 230 Gene3D - 14 97 IPR036879 GO:0003677|GO:0046983
Amo17g1222 230 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 223 - -
Amo17g1222 230 PANTHER MADS-BOX PROTEIN AGL24-LIKE ISOFORM X1 1 223 - -
Amo17g1222 230 Pfam K-box region 92 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Amo17g1222 230 MobiDBLite consensus disorder prediction 207 230 - -
Amo17g1222 230 ProSiteProfiles K-box domain profile. 85 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Amo17g1222 230 Coils Coil 141 171 - -
Amo17g1222 230 CDD MADS_MEF2_like 3 74 IPR033896 GO:0000977|GO:0045944
Amo17g1222 230 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Amo17g1222 230 SUPERFAMILY SRF-like 3 74 IPR036879 GO:0003677|GO:0046983
Amo17g1222 230 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Amo17g1222 230 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g1222 Amo-Chr17 35312416 35323757 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g1222 1 227 MADS-box Gene Family AT2G22540 51.406 2.48e-77 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Amo17g1222 K-box 5e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g1222 - - vvi:100260900 270.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g1222 17 35312416 35323757 Amo17g1222 17 35312416 35323757 ECH