Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g1190 ATGGATTCTCTTCTCTCACTCCAAACCCCAAGCAACAACCCACACCCTCATTCACCGCCAGGCCTCACCCCAACGCCGTTACGGTTACAACCAACACAAACGCCGTTACTAGTTCCAAAACCAGAGCCTCTCGACGATTTCTTCTTTTCTAATAATTCCCAACAACGCCCTCACTGGTTCCCTCACCARCAACAACTACAACCACCCCAACCTAACAACAACGAGTTTGAGTTACACGCGCCACCATTCGCGTCTGCTTCTCCAGAAGAACAAGAAGACTCCGAACTCTACAACCACTTCTTCCGAGTCTCTCAGCTCTTCCGTACAGCTTTCTCTGATACTCTCTTCCAAAAGGACGCCGTTCCGGAACCCGTGACGCCACAATTACAGTCACAGTCGCACCCGAATTTTCAAGATTCTCTTTCCTATGCTTCTAGTTCCCAACCTGAACCTGAGGCTGAGGCTGAGGTTGAGGCAACGCCCGAAGCGGATTCACGCGCCTTGGTTCCCGTTCCGCCATCTTCGTCGTTGGTCGTCGCGGCTCCTTCGAAGCGCGTAAGCAAGAAGAAGCAGCTGGTGAGGGTCTCCGAACTCCGCCTTCACGAGCAGCTTCATTTCCGTGAGGTCGTGAGGCGAACGAGGATGATCTACGACTCGATCCGCGTTCTCTGCACCATCGAGGAAGAGAAGCGCGTCCAGGAGGAGAAAAGAGCTGCCGCCGTCGCTGACGTTGTTACTATTGCCGCTGATGAACCGTTCGCTGCATCTGAATCCACCATTGAATGTTCTTCCTCAGCTGAAACCACCGTCTCTGTTGCCGTGCCAGCTCCTGAATCCGCCGGGGAACAACAATCGGCGAMCRACAATGGCGCCGGCRATAARCAGCCGRAAACAGTCAACAGGGGCGAAGCTGATGCCAAGATGGCGCGGCGGATGCGGCAAAGAGGGGATATTCGTGCGGCGMAGATGATGAGGTTGAAGCATCTTTGGCTGAACTGCGATAAGCGAATCGTCGGAGCGATTCCCGGTGTGTATGTTGGCGACGTRTTCCTCTTTCGGATGGAATTGTGTGTCCTTGGATTGCACGGTCAGATCCAAGCTGGCATTGATTACCTGGCAGCTTCCATGAGCCCCAACAATGAACCAATTGCAACGAGTGTCATTGTCTCCGGTGGCTACGAGGATGATATGGACGAAGGAGATGTYATAATCTACACTGGACAAGGCGGGCAGGCCACGAATTCCGTGAGGCAAGCCACACACCAGAAGTTGGAGAGTGGGAACCTGGCATTGGAGAGGAGTATGTATCATAATATTGAGGTTAGAGTGATTAGAGGGATGAAGTATGAGGGAGCCGCTGCRAAATCCGGTAAGATTTATGTCTATGATGGTTTATATAGGATTTCTGAGTGCTGGTTTGATGTTGGAAAGTCCGGTTTTGGTGTTTATAAGTATAAGCTTGTTAGGAYTGAATGGCAGCCTAAGATGGGTAGTGCTATTCTTAAGGAAGCTAGGRGCATTAGGAAAAGTGGAGTGGRTTTTCAACCAATGTATTGTCTTTCTGTTGATATTTCGAATAAGAAGGAGAAGGTTGCGGTTCGGCTCTTTAATGATATTGATGATAGTAAGGAGCCGCTTTGTTTTGATTATCTTCTGACAACTATTTTCCCTCCATTTGTGTTTCATCAGAGCGGGACAGCTACTGGSTGTGATTGTATTGGCGGTTGTAYGGATGGATGCTTTTGCAGTATGAAGAATGGAGGCGAGTTTCCTTATAATCAGCAGGCGATCCTTGTGAGGGGGAAGCCTTTGATTTTTGAGTGTGGCCCTTTTTGCAGTTGTCCACCTCAATGTAGGAACCGTGTGTCGCAGAATGGGGTGAAGAACAAGTTGGAAGTTTTTAGGTCGAAGCAGACAGGTTGGGGAGTAAGGTCCTTGGACCTTATTCATGCTGGTGCTTTTATCTGTGAGTATTCAGGGGTTGTTTTGACTAGGGAGCAAGCACAGCTTTTGACGATGAATGGTGACTCGTTGATATATCCTAATCGGTTTTCTGAAAGGTGGGCAGAATGGGGTGATTTGTCTCAGGTAAACTCGGACTATGTGCGTCCATCTTATCCGTCAATTCCTCCTCTGGATTTTTCTCTGGATGTGTCAACGGTCCGAAACGTTGCTTGCTATATGAGCCATAGTTCAAGTCCAAATGTTATGGTTCAATTTGTTCTGTATGATCACAACAACTTGATGTTCCCTCACATTATGCTGTTTGCAATGGAGAATATCCCTCCACTGAGAGAGCTCAGCCTTGATTATGGGGTGGCTAATGAGTGGACAGGCAAGCTCTCTATATGCAATGGGTGA 2361 0.4858 MDSLLSLQTPSNNPHPHSPPGLTPTPLRLQPTQTPLLVPKPEPLDDFFFSNNSQQRPHWFPHQQQLQPPQPNNNEFELHAPPFASASPEEQEDSELYNHFFRVSQLFRTAFSDTLFQKDAVPEPVTPQLQSQSHPNFQDSLSYASSSQPEPEAEAEVEATPEADSRALVPVPPSSSLVVAAPSKRVSKKKQLVRVSELRLHEQLHFREVVRRTRMIYDSIRVLCTIEEEKRVQEEKRAAAVADVVTIAADEPFAASESTIECSSSAETTVSVAVPAPESAGEQQSAXXNGAGXKQPXTVNRGEADAKMARRMRQRGDIRAAXMMRLKHLWLNCDKRIVGAIPGVYVGDVFLFRMELCVLGLHGQIQAGIDYLAASMSPNNEPIATSVIVSGGYEDDMDEGDVIIYTGQGGQATNSVRQATHQKLESGNLALERSMYHNIEVRVIRGMKYEGAAAKSGKIYVYDGLYRISECWFDVGKSGFGVYKYKLVRXEWQPKMGSAILKEARXIRKSGVXFQPMYCLSVDISNKKEKVAVRLFNDIDDSKEPLCFDYLLTTIFPPFVFHQSGTATGCDCIGGCXDGCFCSMKNGGEFPYNQQAILVRGKPLIFECGPFCSCPPQCRNRVSQNGVKNKLEVFRSKQTGWGVRSLDLIHAGAFICEYSGVVLTREQAQLLTMNGDSLIYPNRFSERWAEWGDLSQVNSDYVRPSYPSIPPLDFSLDVSTVRNVACYMSHSSSPNVMVQFVLYDHNNLMFPHIMLFAMENIPPLRELSLDYGVANEWTGKLSICNG* 787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g1190 786 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 53 782 - -
Amo17g1190 786 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 121 786 IPR025794 GO:0016571
Amo17g1190 786 SMART preset_2 521 613 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Amo17g1190 786 SMART set_7 629 778 IPR001214 GO:0005515
Amo17g1190 786 ProSiteProfiles Pre-SET domain profile. 568 626 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Amo17g1190 786 SMART G9a_1 334 493 IPR003105 -
Amo17g1190 786 Gene3D - 336 497 IPR036987 -
Amo17g1190 786 ProSiteProfiles YDG domain profile. 339 489 IPR003105 -
Amo17g1190 786 SUPERFAMILY PUA domain-like 321 502 IPR015947 -
Amo17g1190 786 MobiDBLite consensus disorder prediction 1 88 - -
Amo17g1190 786 ProSiteProfiles SET domain profile. 629 772 IPR001214 GO:0005515
Amo17g1190 786 Pfam SAD/SRA domain 338 491 IPR003105 -
Amo17g1190 786 Pfam SET domain 640 772 IPR001214 GO:0005515
Amo17g1190 786 MobiDBLite consensus disorder prediction 122 170 - -
Amo17g1190 786 MobiDBLite consensus disorder prediction 273 305 - -
Amo17g1190 786 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE FAMILY MEMBER SUVH2-RELATED 53 782 - -
Amo17g1190 786 Gene3D SET domain 498 785 IPR046341 -
Amo17g1190 786 SUPERFAMILY SET domain 513 784 IPR046341 -
Amo17g1190 786 MobiDBLite consensus disorder prediction 124 149 - -
Amo17g1190 786 MobiDBLite consensus disorder prediction 47 74 - -
Amo17g1190 786 Pfam Pre-SET motif 524 621 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g1190 Amo-Chr17 32983239 32988491 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g1190 305 774 Su(var)3-9 homologs AT5G04940 41.597 5.13e-104 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Amo17g1190 SAD_SRA 3.2e-47 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g1190 K11420 - aip:107626851 1365.9