Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g1172 ATGAGTAGTTTACAACGGAAGAAACTGAAAGTCTTGGGAGCAAGCTCTTATGGCACTGTTTATTTTGCAACTGTTGTTGATACACACAAACACCGTATCAGAAAAGAAGAACAAATTTTCAAATCATTGTGCAAAGGTGAAAGTGGTGGTTGCGAAGAAATCATTCGATGCTTTGGAACTGAGACCACGGACAAACCTCTCCCGGAAACTGACATGAGCATCTATACACGCATGATTGTTAAAGGGCTTTCGCATATTCATCGCAAAGAAATCGCCCATTGTGACCTCAAGCCAGAGAACATTCTTCTGTTTCCTTCATTGGACAAAGAGAGTGCAAACTATCAATTGAAGATTGCGGATTTCGGATTATCTAAGACCAAAAATGAGGAAGCAGATGTCGAGGTTTGGAAGTCCAAGCCTAGAGATACGTCGTCATACTTTTCGTCGGAGGCATTTTCCAGTCATATTGATGCTCCGATAGATATATGGGCACTTGGCTGCATAAGCTTTTTGCGTACTGAGGAGTATTTGAGGTTCTTCATTGAGTATCTTGAACTATCACCCAAGAAGCCAAAAGGAATCAGTGTTTTCTGTTATGATTTTTTGGAAAAGTGCTTTATGAAGGATCCTAGCAACAAGAGGCCTGATGGTTATGCCGTAGGGTCTCTTGGGTCATGTCGTCTTCTTCTCCTTGATGGCTTTGCCGAAAGGGAGTTGGAATCAGGTGTTTACATGAGTGGTATTTTTGAGAGAACAAGACGCAAAATCTTTATACTGATTACTGAAGATAGAACTGCATTCCAACAAAATTGA 813 0.4096 MSSLQRKKLKVLGASSYGTVYFATVVDTHKHRIRKEEQIFKSLCKGESGGCEEIIRCFGTETTDKPLPETDMSIYTRMIVKGLSHIHRKEIAHCDLKPENILLFPSLDKESANYQLKIADFGLSKTKNEEADVEVWKSKPRDTSSYFSSEAFSSHIDAPIDIWALGCISFLRTEEYLRFFIEYLELSPKKPKGISVFCYDFLEKCFMKDPSNKRPDGYAVGSLGSCRLLLLDGFAERELESGVYMSGIFERTRRKIFILITEDRTAFQQN* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g1172 270 SMART serkin_6 6 223 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo17g1172 270 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 64 212 - -
Amo17g1172 270 Gene3D Transferase(Phosphotransferase) domain 1 5 220 - -
Amo17g1172 270 Pfam Protein kinase domain 63 211 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo17g1172 270 ProSiteProfiles Protein kinase domain profile. 1 230 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo17g1172 270 SUPERFAMILY Protein kinase-like (PK-like) 8 212 IPR011009 -
Amo17g1172 270 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 64 212 - -
Amo17g1172 270 ProSitePatterns Serine/Threonine protein kinases active-site signature. 91 103 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g1172 Amo-Chr17 32482759 32484415 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g1172 33 213 MAP Kinase Kinase Kinase AT4G36950 30.357 1.14e-21 90.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Amo17g1172 Pkinase 5.8e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g1172 - - aip:107610915 301.597