Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g1144 ATGGACGGAGGAGGAGAGGATCCAGTGAGAAAGGCCTTCAGCAAGATGTCCATTCAGTTATATAATTATGGAGAAGGGTGGGTACTGGGTAGACTAAGTGGTGTCTTGCTTCAGGCTGTGAATATGCTGCCAATTTTGACACTGGCAGTGGAAATTATGATGTATCTTGCCTCTGTTCATATAGCTTTTGCTGGAACGATACTTGCTAACTCAAAGCCATGTCCGAAGTACAAGCGACCAATTGAAAAAAATCAAGAGTGCTTGCACATGATGTGTAGTTCACCTTGCTATGCCTTGGTGCTTGGTCAGATCATGGTGAAAGGACTAGGTATGATGAAACTAAAAGAAGAAGAGAAATGGCAAAGAATTCATTGGAGAGGTACACGCATTATTATGAGCGATGGGCCAGCAATCAATCCGCACTCGAGGCAAAAAGCTCTTGCAGATCTACACTGGATGCAAATTGTTCATTGTCAAGAGTCTGTTTAA 489 0.4294 MDGGGEDPVRKAFSKMSIQLYNYGEGWVLGRLSGVLLQAVNMLPILTLAVEIMMYLASVHIAFAGTILANSKPCPKYKRPIEKNQECLHMMCSSPCYALVLGQIMVKGLGMMKLKEEEKWQRIHWRGTRIIMSDGPAINPHSRQKALADLHWMQIVHCQESV* 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g1144 162 Gene3D - 57 99 - -
Amo17g1144 162 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 66 96 - -
Amo17g1144 162 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 66 96 IPR031127 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g1144 Amo-Chr17 31332122 31333774 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g1144 67 155 C3H Transcription Factor Family AT2G31510 39.091 1.80e-12 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g1144 K11968 - sspl:121808307 70.4774