Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g1131 ATGGTCAAAATGATCTCCAATAATAACAAGAACAATGAGAATTGTGAGTCTTGGAGAGATAATTTGAGAAAGGGGCCTTGGACGCCGAGAGAGGACGCCATACTTATCGAGCAAGTAAAGAAGTGTGGCAAAGGTAATTGGAGTTTAATTCGAAAGACTTCTGAGTTGAGGAGAAGTGGCAAAAGTTGTAGGCTTAGATGGTCGAACCATCTAAGGCCTGACTTGAAGAAGGGTCCTTTCTCTGAAAAAGAGGAGAAACTCATCGATGATCTTCATGCTAAGTTCGGAAACAAATGGGCTCTAATGGCTACCRAGGTTCCTGGAAGATCAGACAATGACATCAAAAATTTTTGGAACACAAGAATGAAGAAGCGCCTAAGAGAATATCCTCCACAAATAACGGTTCAACAAGTACAACACTTTTCCTCATCACCATTTTATTCGGTCTTAGCTTCATGTTACCCTAAAAATAATCTCAATGTTGAACTACCTTCAAACATTTCTGCTGCCAATTCTCCACCAAATCATAATCAGAAACAACCTAATCAAAATTATTATTCTTCTTCTTCTTCTTTCTCTTGCACCAATAATAATGCAAGTTTTGTATTGCCATTAGCCCCTATGTCTCCTTATTGTAAGAGTAGTGGTTTATTGAATGATGTGGTGATGGAGGGTAATGCTCTTTGTCGCAAGGGAAAGTCAAAGATGGATGCAACCATTGTTATTGTTAGGGAGAAAGAAGAATTAGCTGATAAGAGGAAAATTATTGAAGAAGGTAAAGAGCCACCGTTGCCACCAATTGGAACCAGTAAAAAGGAAGAAACAGCCACCATTATTGCAACTCAAAGCTCTTCTCATCAATTGATTTCAACAGAGAAGAATGATAATGGAGGTTGTAACAATAACAAGGAGGCATTGAATAATTTTATACCACAAATGGACGATGAATTGCTTAGCATACTTAAAAATTGTCCAATATATTCGCCAGTGCGAAAGTGGTACAAAGTTGATTATGATGAGGACTTCCCTGATGATGATGATGATGGATTTGAATCTTGGTAA 1062 0.3795 MVKMISNNNKNNENCESWRDNLRKGPWTPREDAILIEQVKKCGKGNWSLIRKTSELRRSGKSCRLRWSNHLRPDLKKGPFSEKEEKLIDDLHAKFGNKWALMATXVPGRSDNDIKNFWNTRMKKRLREYPPQITVQQVQHFSSSPFYSVLASCYPKNNLNVELPSNISAANSPPNHNQKQPNQNYYSSSSSFSCTNNNASFVLPLAPMSPYCKSSGLLNDVVMEGNALCRKGKSKMDATIVIVREKEELADKRKIIEEGKEPPLPPIGTSKKEETATIIATQSSSHQLISTEKNDNGGCNNNKEALNNFIPQMDDELLSILKNCPIYSPVRKWYKVDYDEDFPDDDDDGFESW* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g1131 353 Gene3D - 24 76 - -
Amo17g1131 353 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 76 126 IPR017930 -
Amo17g1131 353 MobiDBLite consensus disorder prediction 1 15 - -
Amo17g1131 353 ProSiteProfiles Myb-like domain profile. 19 71 IPR001005 -
Amo17g1131 353 SUPERFAMILY Homeodomain-like 21 118 IPR009057 -
Amo17g1131 353 SMART sant 23 73 IPR001005 -
Amo17g1131 353 SMART sant 76 124 IPR001005 -
Amo17g1131 353 Pfam Myb-like DNA-binding domain 27 86 - -
Amo17g1131 353 Gene3D - 79 142 - -
Amo17g1131 353 ProSiteProfiles Myb-like domain profile. 72 122 IPR001005 -
Amo17g1131 353 CDD SANT 79 120 IPR001005 -
Amo17g1131 353 CDD SANT 26 71 IPR001005 -
Amo17g1131 353 MobiDBLite consensus disorder prediction 164 189 - -
Amo17g1131 353 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 19 75 IPR017930 -
Amo17g1131 353 MobiDBLite consensus disorder prediction 1 22 - -
Amo17g1131 353 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 8 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g1131 Amo-Chr17 30859009 30862212 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g1131 19 139 MYB Transcription Factor Family AT3G11440 60.000 1.85e-47 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo17g1131 Myb_DNA-bind_6 3.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g1131 K09422 - ahf:112771967 669.848