Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g1130 GTCTTACTCAAGGAGATCAAGGTATTCTCCTTCTCCTTCCCGTCCCCATACAAGGGGTACAGCAGGAGCGTCTCAAGTGATGCAGAAAATTCTGGAAATAACTTGTATGTGACTGGATTATCTCCTAGGATCACTAAGAGAGAACTGGAGAAGCATTTTGCAGCTGAAGGAAAGGTCATAGATGTACATCTTGTAGTTGATCCGTGGACAAGAGAATCACGTGGGTTTGGCTTTGTGACAATGGCAAATCTTGAGGATGCTGATCGATGTGTGAAATATTTAAACTGCTCTGTACTTGAAGGGAGTGAAGCAATAGGTGGACTTAATCCTGAGCTTTGTAGGTCACTAAAAACTGATGCTTCAACAAATTATGCGCTTTCTCCTGAAGTATTTTCTGAAGCAGTTTCAAGAGACATTGCTAGTGGTCTTATACCATTTTTCTTATGTGCTACTGTTGGTACAACTTCATCAACTGTTCCAGGTGCTACTACTTTGGCTGAAAAGCTGAACCACCAAGGTATTGATGTGGTTTCAGTTTCAAAGACACGCGTAATCATTGTATCTGCTGTAAGGGAGATGCTTGGTGCTGGCATTTGTTTGTTTTTGTTGGTAACTCATTCTAAAATTTCTTAG 633 0.4107 VLLKEIKVFSFSFPSPYKGYSRSVSSDAENSGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMANLEDADRCVKYLNCSVLEGSEAIGGLNPELCRSLKTDASTNYALSPEVFSEAVSRDIASGLIPFFLCATVGTTSSTVPGATTLAEKLNHQGIDVVSVSKTRVIIVSAVREMLGAGICLFLLVTHSKIS* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g1130 210 SUPERFAMILY RNA-binding domain, RBD 21 102 IPR035979 GO:0003676
Amo17g1130 210 Gene3D - 35 93 IPR012677 -
Amo17g1130 210 SMART rrm1_1 34 107 IPR000504 GO:0003723
Amo17g1130 210 Gene3D - 94 163 IPR015421 GO:0003824
Amo17g1130 210 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 35 102 IPR000504 GO:0003723
Amo17g1130 210 PANTHER TRANSFORMER-2-RELATED 20 101 - -
Amo17g1130 210 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR SR45A-LIKE ISOFORM X1 20 101 - -
Amo17g1130 210 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 33 123 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g1130 Amo-Chr17 30846629 30848156 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g1130 20 95 Eukaryotic Initiation Factors Gene Family AT1G49760 35.065 2.42e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g1130 - - aip:107613061 176.792