Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g1128 ATGTCTCGGCCGCTACTCGGCGTGGTGGGGGATGAGGAAGGTCAGCAGAGCCATGTGACTCTGTTGGTTTCTTCCTCATCCACCATGGAAAGTGTGAATTGTCTGAACAGCTCGAAACTGAAGGAGCGAAACTACATGGGATTGTCTGATTGTTCTTCTGTGGATAGCTCAGTTCCCTCATTCTCTGATGAGACTAAAAGCAATCTGAACCTCAAAGCTACTGAGCTGAGGTTGGGGCTTCCGGGATCTCAGTCTCCTGAAAGAGACTCAGATCTTTGCTTGAGGAGTTCTACTCAATTCGATGAGAAACCTTTGTTTCCTTTGCGTCCTGTAGCTGATGATCATCATTCCTCGTCGAAGCCTGCTCTTTTGGGCAACAAAAGAGGGTTCTCGGATGCAATGAATGGGTTCTCTGAGGAGAAATTGCTTGTTAGTTCGGACGCCAATACAATATTGCCATCTAGGCCTTCTCCTACTGTGGGATTGAAATCGAGCTCTATGCTTGAGAATGCTGCGGCTCAGCAAGCGAAAGTCAATGAAGTAGCAACATCCAAGGTGGGAGAGAGGCCTCATGCTGCCAAAGAAACCAGGCCAAGCCTTAACGATTCCACTGTGAATAATAATAGCAGTGCACCAGCTCCAAAGGCACAGGTTGTAGGATGGCCTCCAATAAGATCATTTAGGAAAAATTCATTGGCTACTACATCGAAGAATGCTGAAGAAGTAGATGGAAAAATGGCTTCTGGTGCACTGTTTGTGAAGGTAAGTATGGATGGCGCGCCATACTTGAGAAAAGTGGACTTGAAGAATTACTCTGCCTATCCAGAGCTTTCTTCTGCTCTGGAGAAGATGTTCAGCTGCTTCACCATAGGTCAATGTGGATCTCATGGAAATCTTGGGAAGGAAATGCTGAGTGAAACCAAGCTGAAGGATCTACTTCATGGATCAGAATATGTTCTTACTTATGAGGATAAAGACGGTGATTGGATGCTAGTGGGTGATGTTCCCTGGGAGATGTTCATCGAAACATGCAGGAGGCTGAGGATCATGAAGGGCGCTGATGCCATTGGTCTAGCACCAAGAGCCGTCGAGAAAAGCAAAAGCAGGAACTAG 1113 0.4663 MSRPLLGVVGDEEGQQSHVTLLVSSSSTMESVNCLNSSKLKERNYMGLSDCSSVDSSVPSFSDETKSNLNLKATELRLGLPGSQSPERDSDLCLRSSTQFDEKPLFPLRPVADDHHSSSKPALLGNKRGFSDAMNGFSEEKLLVSSDANTILPSRPSPTVGLKSSSMLENAAAQQAKVNEVATSKVGERPHAAKETRPSLNDSTVNNNSSAPAPKAQVVGWPPIRSFRKNSLATTSKNAEEVDGKMASGALFVKVSMDGAPYLRKVDLKNYSAYPELSSALEKMFSCFTIGQCGSHGNLGKEMLSETKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIETCRRLRIMKGADAIGLAPRAVEKSKSRN* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g1128 370 ProSiteProfiles PB1 domain profile. 250 352 IPR000270 GO:0005515
Amo17g1128 370 MobiDBLite consensus disorder prediction 197 214 - -
Amo17g1128 370 MobiDBLite consensus disorder prediction 176 217 - -
Amo17g1128 370 Gene3D - 245 364 - -
Amo17g1128 370 SUPERFAMILY CAD & PB1 domains 246 351 - -
Amo17g1128 370 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 27 364 IPR003311 GO:0005634|GO:0006355
Amo17g1128 370 Pfam AUX/IAA family 74 361 IPR033389 -
Amo17g1128 370 PANTHER AUXIN-INDUCED PROTEIN 27 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g1128 Amo-Chr17 30777981 30782809 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g1128 264 355 B3 DNA Binding Superfamily AT1G19220 30.435 1.18e-07 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Amo17g1128 AUX_IAA 5.4e-91 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g1128 K14484 - gmx:100818881 582.408
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g1128 17 30777981 30782809 Amo17g1128 17 30777981 30782809 ECH