Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g1102 GAAGATGATTCTGATCAGTGTAAGAACAAAAGAACCGCCACAAAGACAGCAAGAGGAAGAGGTTGCTACAAAAGAAGGAGGAGTGCAGACACATGGACCATAGTTTCGCTCACTGCTGATGATAATTACACATGGAGGAAATATGGACAGAAACAAATCTTGAGTTCTATATTTCCAAGGAGCTACTTTAGATGCAGTAGAAAGTATGAGGAAGGTTGCCGGGCAATCAAACAGGTGCAAAAGACACAAGAGAATCCTGTTATGTACGAAACTACCTACACTGGCATGCATACATGCAAATCCACCCCCAATAGTAATAATAATGTTCCACGTTTGCTTCTGAATTCTCAGAATCATCATCATGATTCTAAGGTATCCAATGAAAAGGATTATTACCCTATAATTAGTCCTCTAACTCCAACTGTAACACAAGAACATGCTAAAGAAGATTCACCTAGTGATGTTGGAGATCATAAACTGGATCCTGTTTGGTCGGATTTGAAGGATTTTGAACCATCCATCAAGCCTTCCATTAACTTGGTAAAGAATTTTGGGATGGATTCTGTTCATTTTGGCACTCATGATGATGATGATGATGATGAGTTCCAGCCACCACTTTGA 621 0.3961 EDDSDQCKNKRTATKTARGRGCYKRRRSADTWTIVSLTADDNYTWRKYGQKQILSSIFPRSYFRCSRKYEEGCRAIKQVQKTQENPVMYETTYTGMHTCKSTPNSNNNVPRLLLNSQNHHHDSKVSNEKDYYPIISPLTPTVTQEHAKEDSPSDVGDHKLDPVWSDLKDFEPSIKPSINLVKNFGMDSVHFGTHDDDDDDEFQPPL* 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g1102 206 Pfam WRKY DNA -binding domain 40 100 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo17g1102 206 SMART WRKY_cls 39 101 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo17g1102 206 MobiDBLite consensus disorder prediction 139 158 - -
Amo17g1102 206 SUPERFAMILY WRKY DNA-binding domain 36 101 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo17g1102 206 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 18 180 IPR044810 GO:0003700
Amo17g1102 206 ProSiteProfiles WRKY domain profile. 40 102 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo17g1102 206 PANTHER WRKY FAMILY TRANSCRIPTION FACTOR 18 180 - -
Amo17g1102 206 Gene3D WRKY domain 25 103 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g1102 Amo-Chr17 29456174 29461064 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g1102 20 167 WRKY Transcription Factor Family AT3G56400 39.474 9.26e-33 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Amo17g1102 WRKY 4.3e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g1102 - - aip:107608135 416.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g1102 17 29456174 29461064 Amo20g2326 20 108154897 108157783 ECH
Amo17g1102 17 29456174 29461064 Amo17g1102 17 29456174 29461064 ECH