Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g1100 ATGAAGAAGAATACCCTTTGTTCTGAAAATAACGATGTCTCATGGAAGAAGAAAAGAAGAATAATCAAAGAACTTGTTCAAGGTCAAGAAGCTGCGACTCAGCTGAAGCTTCTTCTTCAGAACCCCATTGGAGACACTTCTCTCTCAGCTGAAGAGCTTCTTGGCAATGTCCTTACTTCCTTCGCTGAAACCCTTTCTCTTCTTGCTTCTAATCATTCCCAGGAACAACCTTGTCGCCATGATCCGTCGCCGTCGTCGGCAGATCCCAGCGATGATTATTCCGGAGAATCTCATAATATGAAGAGATCTAATTTGACTCCGGCCAAAAAAGTTGGTAGAGGCTGCTACAAAAGAAGGAGGACTGAACACACATGGACCACAATCTCTCCCACTGCAGATGATAATAATGCATGGAGGAAATATGGAGAGAAAGAAATTCAGAATTCTAAATTTCCTAGGAGCTACTTTAGATGCAGTAGAAAGTATGATCAAAATTGCCGGGCAATCAAACATGTGCAGAGGACACAAGAGAATCCTTGTATGTACCAAATCACATACATTGGCATGCACTCGTGCAAAGCCACCCCCAATGATGCTCCAACTATAAACCAAGACACTACTCCTCCTCCTCCTCCTCCTCCTCCTCCTAGTGATGTTGTAGATCCTTCTATGTTGTCAGATTTGAAGGATATTATTGAACCATACAAGCCTTCCATTATTATGCCACCAAATATGGTATCAAATGATAATGCAAACAATATATATCCATGTCCAAGCTCTCTATGTTCGGATATGGATTTTGGGGTGGATTTAGTTCATTTTAGGGAATCATGA 834 0.4161 MKKNTLCSENNDVSWKKKRRIIKELVQGQEAATQLKLLLQNPIGDTSLSAEELLGNVLTSFAETLSLLASNHSQEQPCRHDPSPSSADPSDDYSGESHNMKRSNLTPAKKVGRGCYKRRRTEHTWTTISPTADDNNAWRKYGEKEIQNSKFPRSYFRCSRKYDQNCRAIKHVQRTQENPCMYQITYIGMHSCKATPNDAPTINQDTTPPPPPPPPPSDVVDPSMLSDLKDIIEPYKPSIIMPPNMVSNDNANNIYPCPSSLCSDMDFGVDLVHFRES* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g1100 277 MobiDBLite consensus disorder prediction 72 104 - -
Amo17g1100 277 ProSiteProfiles WRKY domain profile. 127 195 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo17g1100 277 SUPERFAMILY WRKY DNA-binding domain 129 194 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo17g1100 277 MobiDBLite consensus disorder prediction 203 220 - -
Amo17g1100 277 MobiDBLite consensus disorder prediction 195 223 - -
Amo17g1100 277 MobiDBLite consensus disorder prediction 72 117 - -
Amo17g1100 277 Gene3D WRKY domain 118 195 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo17g1100 277 Pfam WRKY DNA -binding domain 133 193 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo17g1100 277 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 11 197 IPR044810 GO:0003700
Amo17g1100 277 SMART WRKY_cls 132 194 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo17g1100 277 PANTHER WRKY DNA-BINDING TRANSCRIPTION FACTOR 70 11 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g1100 Amo-Chr17 29414176 29419242 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g1100 12 192 WRKY Transcription Factor Family AT3G56400 39.037 2.83e-37 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Amo17g1100 WRKY 7.8e-21 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g1100 - - ahf:112762555 543.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g1100 17 29414176 29419242 Amo07g1955 07 58526164 58531104 hybridization
Amo17g1100 17 29414176 29419242 Amo08g0431 08 8330606 8331970 PCT
Amo08g0431 08 8330606 8331970 Amo17g1100 17 29414176 29419242 PCT