Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g1097 ATGCTGCGACATCCAAACGTGGCCTCCACACTAAGGAGCAGAACAACACTGTCGCTACCTCCGCCAACAATGCTCTCGCCGTCGCCGCCGCCTTCCGCCGCGTCTCCCACCAAAACAACGCTTCCATCCTCCCTCTCCACCGCACCTTCCAAGCCCTCATTCCACCACTTCCCTATCTCTTCCACATCTTCGAACTCTCACACACTTCACAGCATAATGACCCGTTCCAATTCCAAGTGTTTCTTCTCCTCCGGGAACACCACAACACCGATTGCCATATCGGAAATGACCCGAACCGAAAATCCGGAACCCGAATCCGACGTGGATGAATCTCTGGTGGTGGTTTCGTTCTACAAGTTCGCGGATTTCTCTGACCATGCAGCTATGAGGAAACCCTTGAAGGAGCTTTGCCAACAACTTCGTGTTTCAGGCGGTATTATTCTTGCGCCTGAAGGGATCAATGGCAGCATATGTGGCATTCGGGAGTCGGTGGAGAAAGTTCTTGCATTCATACAAAGTGATGACCGATTGAAAGGGCTAAGACGGGTTGAATCGCCTGTTAGTCCCGAGGAGGAAGCCATTCACCATGGACACAGTGCCAGTTCTCCTCTTGCTGCAGGGGAAGATGCACCTTTCCGGTGGGATCATGTGAGGGTCAAATTGAAGAAAGAGATTGTCACTCTTGGGATGCCTAGCATATCACCTATTGAAAAGGTTGGGAAATATGTTGGCCCGAAAGAGTGGAATGCTTTGATTAGTGATCCAGATACGGTTGTGATTGATGTGAGGAATAACTACGAAACCAGAATAGGAAAGTTTAAAGGAGCAGTTGATCCATGTACTTCATCATTCCGAGAATTCCCCTCTTGGGTGGAGGAGCATTTCCAGCTTACTGGATGTGGGCTTCCGGAAGTTGAGGTAGACAATTCAATCAAAAGTGATGAAAGTGAAATGGAGAATCCAAAACAAAATATGCCAAAACGTGTCGCAATGTATTGCACTGGAGGTATCCGATGCGAGAAAGCAACAAGTCTACTTCTCAGAAAAGGTTTCAAAGAGGTCTATCACCTTGAAGGTGGAATCCTGAAATATCTCGAGGAAGTTCCAGAGAAACAGAGCCTCTGGGACGGTGAGTGCTTTGTCTTCGACAAGCGAGTCTCCGTTGAGCATGGATTGGTGCCAGGAAACTTCAAGCTCTGCTATGGTTGCAAGCAGCCTGTGAGTGATGCTGACATGGAATCCCCTGAGTATGAATATGGAGTTTCTTGTCCTTACTGCTTTTCGTCGAAATCAGAAGAAGAGAAGGAGAGGGCTCGTGCGCGACAACGACAATTTGAGAGGTGGGGAATCATAGGTGGTCCGGATAAGGGTCGCCAGCCATCAAGTAAACCGGACAGTGGCTGTGCAAAACCAAACCAGCTTTCACGTTCTGTTTAA 1437 0.4864 MLRHPNVASTLRSRTTLSLPPPTMLSPSPPPSAASPTKTTLPSSLSTAPSKPSFHHFPISSTSSNSHTLHSIMTRSNSKCFFSSGNTTTPIAISEMTRTENPEPESDVDESLVVVSFYKFADFSDHAAMRKPLKELCQQLRVSGGIILAPEGINGSICGIRESVEKVLAFIQSDDRLKGLRRVESPVSPEEEAIHHGHSASSPLAAGEDAPFRWDHVRVKLKKEIVTLGMPSISPIEKVGKYVGPKEWNALISDPDTVVIDVRNNYETRIGKFKGAVDPCTSSFREFPSWVEEHFQLTGCGLPEVEVDNSIKSDESEMENPKQNMPKRVAMYCTGGIRCEKATSLLLRKGFKEVYHLEGGILKYLEEVPEKQSLWDGECFVFDKRVSVEHGLVPGNFKLCYGCKQPVSDADMESPEYEYGVSCPYCFSSKSEEEKERARARQRQFERWGIIGGPDKGRQPSSKPDSGCAKPNQLSRSV* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g1097 478 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 222 399 IPR036873 -
Amo17g1097 478 MobiDBLite consensus disorder prediction 1 67 - -
Amo17g1097 478 PANTHER THIOSULFATE SULFURTRANSFERASE/RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 2 108 459 - -
Amo17g1097 478 Pfam Rhodanese-like domain 245 366 IPR001763 -
Amo17g1097 478 ProSiteProfiles Rhodanese domain profile. 253 373 IPR001763 -
Amo17g1097 478 Hamap tRNA uridine(34) hydroxylase [trhO]. 110 410 IPR020936 -
Amo17g1097 478 Gene3D - 227 406 IPR036873 -
Amo17g1097 478 SMART rhod_4 243 370 IPR001763 -
Amo17g1097 478 PANTHER THIOSULFATE SULFURTRANSFERASE/RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 2 108 459 IPR020936 -
Amo17g1097 478 MobiDBLite consensus disorder prediction 37 67 - -
Amo17g1097 478 MobiDBLite consensus disorder prediction 437 478 - -
Amo17g1097 478 Pfam UPF0176 acylphosphatase like domain 113 225 IPR040503 -
Amo17g1097 478 MobiDBLite consensus disorder prediction 22 36 - -
Amo17g1097 478 CDD RHOD_YceA 240 366 - -
Amo17g1097 478 Gene3D - 100 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g1097 Amo-Chr17 29322450 29326109 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g1097 111 472 Sulfurtransferasese or Rhodanese AT2G40760 76.839 0.0 584
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g1097 - - gmx:100784854 650.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g1097 17 29322450 29326109 Amo17g1097 17 29322450 29326109 ECH
Amo17g1097 17 29322450 29326109 Amo07g1959 07 58579797 58583595 hybridization