Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g1094 ATGGGCTTGGGAAAAACTGTTGAATTACTTGCTTGCATCTTTGCTCACCGGAGATCAGCATCTGAAAGTGATATACTAGTTGAACCAGTGCCTCAAGTTAATGAAGACCAAAATGTCACTTTAAAAAGACTCAAAAGGGAGCGTGTGGAGTGTATATGTGGATCTGTGAGTGAAAGTCTGAAATATGAAGGACTATGGGTTCAATGTGATATTTGTGATGCTTGGCAGCATGCTGATTGTGTTGGTTATTCAGCTAGAGGAAAATCACTGAAATCAAGACATGGATGTGAAGGCAAGACATATAAAACCACAATAGCTGTAAGGGATGGTGAATATGTATGTCAGATGTGCTCTGAACTAATACAAGTGACTGAATCTCCCATTGCATCGGGTGCCACTCTTATTGTCTGCCCAGCTCCTATTTTGCCCCAGTGGCATGATGAAATTATACGCCATACGCGCTCGGGATCCTTGAAAACTTGTATTTATGAAGGCGTGCGGGAGACTTCTTTATCCAACACATCTATAATGGATATCAGTGAACTCGCCACTGCTGACATTGTGTTAACTACCTATGATGTGCTTAAAGAGGATTTATCCCATGATTCTGATAGACATGAAGGTGATCGACACTTTTTGAGATTTCAAAAGAGGTACCCAGTTGTCCCAACTCTTCTCACCAGGATATATTGGTGGAGGGTTTGTTTGGACGAGGCTCAAATGGTGGAAAGTAATACTGCTGCTGCCACTGAAATGGCTCTAAGACTCCATTCTAAGCATCATTGGTGCATAACAGGAACCCCAATTCAGCGCAAGCTTGATGATTTATATGGGCTGCTAAGGTTTCTTAAAGCTAGCCCTTTCAATACATACAAGTGGTGGACTGAAGTTATTCAAGATCCTTATGAGAAGGGAGATATGGGAGCTATGGAATTTACACACAGAGTTTTCAAACAAATCATGTGGCGTTCTTCTAAAGAACATGTTGCAGATGAATTGGACCTTCCGTCTCAGGAGGAGTGTCTCTCTTGGCTTACACTCTCACCAGTAGAAGAGCACTTTTATCAGAGGCAACATGAAACCTGTGTCATAGATGCCCATGAAGTTATTGAAAGTTTGAGAAATGATATCCTTAATAGAAAAGACCCAGGTTCTGCATCTTTAAATAGTTTGTCAGATTCTTTAATCACTCACTCAGAGGCAGGGAAGCTACTGAATGCTCTGCTGAAACTTCGTCAGGCTTGTTGTCACCCCCAAGTTGGGAGTTCTGGTCTGCGTTCCCTCCAGCAGTCACCTATGACCATGGAGGAAATACTAATGGTTCTTATAAGCAAGACTAAGGTAGAAGGTGAGGAAGCTCTTAGAAGGTTAGTTGTTGCTCTGAACGGGCTTGCAGCAATAGCAACAATACAAAACGAATTATCTCAAGCTGCATTGCTGTACCACGAAGCTCTGACGTTGGCTGAAGAGCATTCTGAGGATTTCCGCTTGGATCCTTTGTTGAATATCCATGTTCATCATAATCTTGCCGAAATGCTCCCACAGGCTGCAGACCTTGCCCTGAGAGTGTCCTCTAAAGAAAAGCAGTTCTCTCGAACATCCAGAAAGCATTTTATTGACAAGGTTGATCATTGTCTTTTGAAGAGGCAAAAAGTAAGTGGCTGTGATGACACGAAATTTTCAGCGGCTTCGGTAGAACTATCCAATTCTGCATCCAGCCTTTCAGAAGATGACTTAAATGAGAATCAGGATGTTGATGATGTAGCTGTCTGCACTGTCAAATCTCTGACAGCAGAATGTGAAGATTTGAAGCAGAAATACTTATCCGTGTTCAGTACAAAGCTATGTGCAGCTGAACAGGAGTTTCAAAACTCATACATGCAGGTTAGTAATGGATTTAGTGACAGCAAAGCAGATCAAAATATGTTTTGGTGGCTAGAAGCACTTCATCATGCTGAACAGAACAAGGATTTCTCAGCCGAGTTGTCTAGAAAGATTGAAGAAGCGATCTCAGCAGCTGCAAATAGTTCAAAGTCATCAAAAATAGCTGCTCGTTTTCGGAGCATATCATCTCTGAAGTATCAAATTCAGACAGGCTTGGATCAGTTAGAGACCTCTCGGAAAGGTCTATTAGATCGACTGCTAGAAATTGACCAAACGATGGAACAACCAAATGAAGAAGATATTGACCGTATGGGTAAATGTCAAACTTGCCAACCTAATTGTGATGGTCCCCCATGCATTCTGTGTGAACTAGATGAACTCTTCCAGGATTATGAAGCAAGACTATTTGTTCTTAAGAATGAACGTGGCGGAATAATTTCATCCGCTGAGGAGGCAGTAGATCTTCAGAAGAAGAATTTCGCATTGAATCATTTCCTCTCAAAGCTATCAAAATCTAATCACAGAGCAACAGCATCTCAAATTGATAATGAAGAATCAAAGAAAAGGAATGTTGGACAGAGAGTTGTGGTTTCAAGATCAGCATCTGAATTGGAGCTTATTCTCGGTGTTATAAAGAACTATTGCAAGGGTCGATTGGGAAGGGACATTGTCACAGCAGCAACCAAGCATTTACATGTTTTTGAGGGAATGAGGAAGGAGTTTGGCTATGCGAGATCTTTAGCTCTAGCTCAAGCTCAGTACCTACGGGCCCATGATGAAATAAAGATGGCTGTTTCCCGTTTGCACTTAAGGGCAAATGAGGATGATAAATCTCTTGATGCTTTAGGTGAAGATGAGCTATTTGCAGCTAGCTCAAACTTTTCGCATGATAAGTTTATGTCGTTGAACATGTTGTCACAGATAAAAGGAAAGCTCCGCTACTTAAAGGGTTTGGTAGAATCTAAGCAAAAGCTGCCATTGGGAAGTCCAGATAGTTCTTCATTAACTCAAGAGATAACTGCATTGCCAAACTCTACAGAAGAGAGGGGTGCAGTCATATTTAAAGCTGATGAAGAAACATGTCCAATTTGCCAAGAAAAGCTTGGCAGTCAGAAAATGGTATTTCAATGTGGGCATGTTACGTGCTGCAAATGTTTATTTGCTATGACTGAGAATAGGCTTCAACATAGCAAGATTCACAATTGGGTTATGTGCCCAACATGTCGACAGCATACAGATTTTGGAAGCATTGCTTATGCTGTTGATGCACAGAAGGAATCTTCTAATTCTGTAACACCTAATACACTTGACAACTGTGAAAAAAGTGAAGCATCCATGACTGTCAAAGGCTCATATGGAACTAAGATTGAAGCTATCACTAGAAGAATCTTGTGGGTAAAGGCTACAGATCAAAAAGCAAAAGTTCTTGTGTTTTCTAGTTGGAATGACGTACTTGATGTATTGGAGCATGCCTTTGCTGCAAATGACATTACATTCATCCGCATGAAAGGAGGCAGGAAAGCACAAGTTGCTATCAGTCAATTTCGAGGACACGAGAGTGGCAAGAAAGGTGAGAGGCCAGTGTCAAAATCTATTCAGGTGTTATTGCTTTTAATCCAACATGGAGCCAATGGCCTCAATCTCTTGGAAGCACAGCATGTGGTCCTTGTAGAGCCATTACTCAATCCGGCTGCTGAAGCACAAGCGATCAGTCGTGTACATCGTATCGGCCAAAAGAACAAGACCCTCATTCATCGTTTCATTGTCAAAGACACTGTAGAAGAGAGCATATACAAGCTAAACAGAGGCAGGAGCAATCATTCATTCATTAGTGGGAACACAAAAAATCAAGATCAACCTGTTTTGACTCTGAAGGATGTGGAATCCTTACTATCAAGAGCCCCACTAATAATGCCAGAAGCTGATGAAAATGGCAACACAAATTCAAATCTAAGGCATTTGTCACCATCAATGGCTGCGGCTATTGCTGCCGAGAGAAGAGTCAATGAGCAAACATGA 3903 0.4153 MGLGKTVELLACIFAHRRSASESDILVEPVPQVNEDQNVTLKRLKRERVECICGSVSESLKYEGLWVQCDICDAWQHADCVGYSARGKSLKSRHGCEGKTYKTTIAVRDGEYVCQMCSELIQVTESPIASGATLIVCPAPILPQWHDEIIRHTRSGSLKTCIYEGVRETSLSNTSIMDISELATADIVLTTYDVLKEDLSHDSDRHEGDRHFLRFQKRYPVVPTLLTRIYWWRVCLDEAQMVESNTAAATEMALRLHSKHHWCITGTPIQRKLDDLYGLLRFLKASPFNTYKWWTEVIQDPYEKGDMGAMEFTHRVFKQIMWRSSKEHVADELDLPSQEECLSWLTLSPVEEHFYQRQHETCVIDAHEVIESLRNDILNRKDPGSASLNSLSDSLITHSEAGKLLNALLKLRQACCHPQVGSSGLRSLQQSPMTMEEILMVLISKTKVEGEEALRRLVVALNGLAAIATIQNELSQAALLYHEALTLAEEHSEDFRLDPLLNIHVHHNLAEMLPQAADLALRVSSKEKQFSRTSRKHFIDKVDHCLLKRQKVSGCDDTKFSAASVELSNSASSLSEDDLNENQDVDDVAVCTVKSLTAECEDLKQKYLSVFSTKLCAAEQEFQNSYMQVSNGFSDSKADQNMFWWLEALHHAEQNKDFSAELSRKIEEAISAAANSSKSSKIAARFRSISSLKYQIQTGLDQLETSRKGLLDRLLEIDQTMEQPNEEDIDRMGKCQTCQPNCDGPPCILCELDELFQDYEARLFVLKNERGGIISSAEEAVDLQKKNFALNHFLSKLSKSNHRATASQIDNEESKKRNVGQRVVVSRSASELELILGVIKNYCKGRLGRDIVTAATKHLHVFEGMRKEFGYARSLALAQAQYLRAHDEIKMAVSRLHLRANEDDKSLDALGEDELFAASSNFSHDKFMSLNMLSQIKGKLRYLKGLVESKQKLPLGSPDSSSLTQEITALPNSTEERGAVIFKADEETCPICQEKLGSQKMVFQCGHVTCCKCLFAMTENRLQHSKIHNWVMCPTCRQHTDFGSIAYAVDAQKESSNSVTPNTLDNCEKSEASMTVKGSYGTKIEAITRRILWVKATDQKAKVLVFSSWNDVLDVLEHAFAANDITFIRMKGGRKAQVAISQFRGHESGKKGERPVSKSIQVLLLLIQHGANGLNLLEAQHVVLVEPLLNPAAEAQAISRVHRIGQKNKTLIHRFIVKDTVEESIYKLNRGRSNHSFISGNTKNQDQPVLTLKDVESLLSRAPLIMPEADENGNTNSNLRHLSPSMAAAIAAERRVNEQT* 1301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g1094 1300 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1086 1256 IPR001650 -
Amo17g1094 1300 SMART PHD_3 50 118 IPR001965 -
Amo17g1094 1300 Pfam Helicase conserved C-terminal domain 1083 1205 IPR001650 -
Amo17g1094 1300 ProSitePatterns Zinc finger PHD-type signature. 51 117 IPR019786 -
Amo17g1094 1300 Gene3D - 1051 1298 IPR027417 -
Amo17g1094 1300 SUPERFAMILY FYVE/PHD zinc finger 47 120 IPR011011 -
Amo17g1094 1300 ProSiteProfiles Zinc finger PHD-type profile. 48 120 IPR019787 -
Amo17g1094 1300 CDD SF2_C_SNF 1080 1216 - -
Amo17g1094 1300 Gene3D - 101 345 IPR038718 -
Amo17g1094 1300 SUPERFAMILY RING/U-box 984 1041 - -
Amo17g1094 1300 CDD PHD_TCF19_like 52 117 - -
Amo17g1094 1300 Pfam Zinc finger, C3HC4 type (RING finger) 989 1036 IPR018957 GO:0046872
Amo17g1094 1300 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 47 100 IPR013083 -
Amo17g1094 1300 ProSiteProfiles Zinc finger RING-type profile. 989 1037 IPR001841 -
Amo17g1094 1300 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 328 1261 IPR027417 -
Amo17g1094 1300 Pfam SNF2-related domain 1 420 IPR000330 GO:0005524|GO:0140658
Amo17g1094 1300 SMART ultradead3 60 294 IPR014001 -
Amo17g1094 1300 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER 1 1277 - -
Amo17g1094 1300 CDD DEXQc_SHPRH 1 324 - -
Amo17g1094 1300 SMART helicmild6 1114 1205 IPR001650 -
Amo17g1094 1300 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 976 1050 IPR013083 -
Amo17g1094 1300 SMART ring_2 989 1036 IPR001841 -
Amo17g1094 1300 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 336 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g1094 Amo-Chr17 29127298 29141386 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g1094 125 418 RAD5 or RAD16-like Gene Family AT5G22750 30.435 5.64e-37 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Amo17g1094 SNF2_N 1.1e-74 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g1094 K15710 - gmx:100776659 2145.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g1094 17 29127298 29141386 Amo17g1094 17 29127298 29141386 ECH
Amo17g1094 17 29127298 29141386 Amo07g1962 07 58605631 58619950 hybridization