Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g1086 ATGGTTTTCGCTCGACACAAGCCATTCGTGAACCATTTGGAATTGAAACTACCAAATGGACCACCTGATCTATTTACTTGTGAATCTGATTATGTGGATTCATTTTCTGATGTGTTTGGTCCTACTCCCATTGAAGCTTCAATTGGGAATTTGGTAGTTGCAACAAGTTCAAGTGGAAAGGTTTGCAATGATTATCCTTCTGTCATTCATATCCGCTCACATTCTTTACATTCAAGTGGAGCATATATTGATCCATCCTCAGTGCGTAGCAAACTCACTTTACACGAGACAGGTGATGCGTTGGAACTTTTTGCAGAGAAGGAGTATAGAGAAGCAAAGGAAGAACTTGAGTATTCAGTTAATGATGATGCTGTAAAGGAAAATAATTTAGAATCTAATGATTGTTGCATGAATTATCAGAGTATTGGAGTTGAGGATTTTGAAGTTTTGAAGGTTGTTGGTCAAGGTGCTTTTGGTAAGGTGTACCAGGTAAGGAGGACCGGTACTTCGGAAATATATGCGATGAAGGTGATGCACAAGGATAAGATTGTGCAAAAAAATCATGCAGAATATATAAAATCTGAAAGAGATATATTGACAAAGGTGGTACACCCTTTTATTGTGCGGCTCAGATACTCATTCCAAACAAAATATAGGCTATACTTGGTGCTTGATTTTGTCAATGGTGGTCATGTTTTCTTTCATCTCTATCGCCAAGGRCTATTCAGGGAGGATTTGGCACGCTTCTATGCTGGAGAGATTGTTTGTGCTGTTTCTCATCTTCATGCAAATGGTATAATGCACAGGGATCTTAAACCTGAAAATATTCTTCTCGATGCAGATGGTCATCTAGTGTTAACGGATTTTGGCCTGGCTAAGGAATTCACMGAGAMCGCAAGGTCAAATTCTATGTGCGGAACTTTAGAGTACATAGCTCCTGAAATCTTTATAGGGAAGGGTCATGATAAGGCAGCAGATTGGTGGAGTGTGGGGATTTTGCTATTTGAAATGCTTACAGGGAAACCTCCTTTTACGGGTGGAAATAGACAGAAGATTCAGCAGAAGATAATAAAAGACAAACTGAAGCTCCCGGCTTTCTTGTCAAGCGAAGCACATTCACTGCTAAAAGGGCTGTTGCAGAAAGATGCCAGGAAGCGCCTCGGCAGCGGGGACAGAGGCAGCGAGGAGATAAAAAGCCACAAATGGTTTAAATCAGTCAACTGGAAGAAGCTGGAAGCTCGAGAAATAAGGCCGAGTTTTGTCCCCGAAGTTTCCGGAAAGCACTGTGTTGCGAACTTCGAGGAGCGGTGGACTAACATGCCATTGCTGGATTCTCCAGCTGCTAGTCCCAAAAAGGATGACAATACCTTCAAGAAGTTCTCCTTTATTGGTACTCCCAGTCTGTGCCTTGTGGGAGATGCTTGA 1425 0.4175 MVFARHKPFVNHLELKLPNGPPDLFTCESDYVDSFSDVFGPTPIEASIGNLVVATSSSGKVCNDYPSVIHIRSHSLHSSGAYIDPSSVRSKLTLHETGDALELFAEKEYREAKEELEYSVNDDAVKENNLESNDCCMNYQSIGVEDFEVLKVVGQGAFGKVYQVRRTGTSEIYAMKVMHKDKIVQKNHAEYIKSERDILTKVVHPFIVRLRYSFQTKYRLYLVLDFVNGGHVFFHLYRQGLFREDLARFYAGEIVCAVSHLHANGIMHRDLKPENILLDADGHLVLTDFGLAKEFTEXARSNSMCGTLEYIAPEIFIGKGHDKAADWWSVGILLFEMLTGKPPFTGGNRQKIQQKIIKDKLKLPAFLSSEAHSLLKGLLQKDARKRLGSGDRGSEEIKSHKWFKSVNWKKLEAREIRPSFVPEVSGKHCVANFEERWTNMPLLDSPAASPKKDDNTFKKFSFIGTPSLCLVGDA* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g1086 474 Gene3D Phosphorylase Kinase; domain 1 145 446 - -
Amo17g1086 474 CDD STKc_AGC 153 403 IPR045270 GO:0004674|GO:0005524
Amo17g1086 474 Pfam Protein kinase domain 147 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo17g1086 474 ProSiteProfiles Protein kinase domain profile. 147 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo17g1086 474 ProSitePatterns Serine/Threonine protein kinases active-site signature. 266 278 IPR008271 GO:0004672|GO:0006468
Amo17g1086 474 PANTHER SERINE/THREONINE-PROTEIN KINASE ATPK2/ATPK19 6 467 - -
Amo17g1086 474 ProSiteProfiles AGC-kinase C-terminal domain profile. 404 472 IPR000961 GO:0004674|GO:0005524|GO:0006468
Amo17g1086 474 PANTHER RIBOSOMAL PROTEIN S6 KINASE 6 467 - -
Amo17g1086 474 SMART serkin_6 147 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo17g1086 474 ProSitePatterns Protein kinases ATP-binding region signature. 153 176 IPR017441 GO:0005524
Amo17g1086 474 Gene3D Transferase(Phosphotransferase) domain 1 227 422 - -
Amo17g1086 474 SUPERFAMILY Protein kinase-like (PK-like) 144 450 IPR011009 -
Amo17g1086 474 SMART pkinase_C_6 404 464 IPR000961 GO:0004674|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g1086 Amo-Chr17 28753195 28756985 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g1086 7 466 AGC Kinase Gene Family AT3G08720 63.067 0.0 574
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC-Pl Amo17g1086 Pkinase 5.7e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g1086 K04688 - gmx:100803509 654.055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g1086 17 28753195 28756985 Amo07g1971 07 58946092 58949463 hybridization