Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g1074 ATGGATTTCAATGGGATGTTTGGGGCCGAAGTGGAACAGTCAGATGAGAACAGCTCGGATGGATATTGTGGCCGTTATTATGCGAGTGATGACGAAGGTGGTGAGGAAGGTGACCCAACAGGGCACAGAGAAGATGAACATGGTAATTTCTCAGGTGGTGCCAGTCATGCAGGGGATGGTGGCAAAATTCGGCCGGTTGTGGCAGAGGATTTCCTAGGCAGAGAGTTTGTTGGGGAGGAGGATGCCTATCTTGCGTACAAGGAGTTTGCTAGGACGAGGGGTTTCGGGGTCCGCAAGGGAGATGTGGGACATCCTAAGCACTATGATCATCCTGAGCGAGTTAGGGAGGAGAGGTTGGAGAGTCGAACCGACTGCAAGGCGAAGTTGAAGATTTACTATGATGTGCAACGCAGTGTGTGGAAGGTCAGGACCATCTTCGATGAGCACAACCACGAGCTTGCTCCGACCATGTTTTCCCACCTCTTACCTAGCCATCGCAAGATGAATCGCGTTGTAAAGGATTATCGAAACAACGAAGTCACGGCGCAGTTCTATTCTACGTATTATAGCCCAGTGTTAACAACCGGGCTTGACTCCATTGAGCTTTTTGCATCAAAACTGTACACGCGGGCAGTTTTTAGAGAGGTGAAGAAACAAATCAAGGGTGTTGCGACATTGTTGTTTCATGGGAGAGATAACATCAGCACAACGGTTGTCTACAAGTTTTCAAGGATGGGTGCCCCTGGTAGGATTCACAAGGTTTTGTTCGACCCCGATGACAAGAAAATTCAGTGCGACTGTTCGATGTGGAATAGCGAGGGTATTCCATGTAGTCACATTTTCTGCGTGATGAAACACGAGGGTTTGGATCAAATCCCGGACAGTCTTATAATGAGAAGATGGTGCAAGAATGCAAAAGATTCCAGCCGGATGCCGGTGACTACGAGACCTGGACATGAGGGTCGCATGCTTAGGTATGCCACACTTTGTTCGGCCACAAGCTTGGTCGCAAGACTTGGTTCGGAGGAGGGCGAAGACTTTGAATTCGCTAGGGAGAGCATCGCAAGTGTAATAGAAAAGCTACGTCACAGATTTTATGAGAGGGCAGGCGGTCAGCCAGGTATGTCGGCGTGGAGCCCGATGAAGGACCCGGTGGTCGCAAGAACAAAAGGTGCCCCTAAGAGGACGAAGGATTTCGACCTAAGCAGTCAACCCGATTTCTGA 1224 0.4967 MDFNGMFGAEVEQSDENSSDGYCGRYYASDDEGGEEGDPTGHREDEHGNFSGGASHAGDGGKIRPVVAEDFLGREFVGEEDAYLAYKEFARTRGFGVRKGDVGHPKHYDHPERVREERLESRTDCKAKLKIYYDVQRSVWKVRTIFDEHNHELAPTMFSHLLPSHRKMNRVVKDYRNNEVTAQFYSTYYSPVLTTGLDSIELFASKLYTRAVFREVKKQIKGVATLLFHGRDNISTTVVYKFSRMGAPGRIHKVLFDPDDKKIQCDCSMWNSEGIPCSHIFCVMKHEGLDQIPDSLIMRRWCKNAKDSSRMPVTTRPGHEGRMLRYATLCSATSLVARLGSEEGEDFEFARESIASVIEKLRHRFYERAGGQPGMSAWSPMKDPVVARTKGAPKRTKDFDLSSQPDF* 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g1074 407 ProSiteProfiles Zinc finger SWIM-type profile. 252 288 IPR007527 GO:0008270
Amo17g1074 407 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 109 161 - -
Amo17g1074 407 MobiDBLite consensus disorder prediction 387 407 - -
Amo17g1074 407 Pfam SWIM zinc finger 260 280 IPR007527 GO:0008270
Amo17g1074 407 MobiDBLite consensus disorder prediction 29 50 - -
Amo17g1074 407 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 167 364 - -
Amo17g1074 407 MobiDBLite consensus disorder prediction 388 407 - -
Amo17g1074 407 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 167 364 IPR031052 GO:0006355
Amo17g1074 407 MobiDBLite consensus disorder prediction 1 61 - -
Amo17g1074 407 Pfam FAR1 DNA-binding domain 110 154 IPR004330 -
Amo17g1074 407 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 109 161 IPR031052 GO:0006355
Amo17g1074 407 SMART 26again6 263 290 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g1074 Amo-Chr17 28477854 28480037 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo17g1074 FAR1 3.1e-07 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g1074 - - aip:110265240 441.425