Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g1068 ATGGAATCTTTGGATGCCACCATTTCTTCTAATTCACCATCTTCAATATTATCATCTTCTAGTGGTGTGAATAATAATGATAATATTAGTAGTGTAAGTAATGATAACAATGTTAATAGTAATAGTAATGGTGGAACTGTGACATGGTATGGTGTGAGGCTACCATCTGTTAGCCCTTTACGTTCCCCACTTTCCTTTCTCTTGGATTACTCTGGCATTCTAAGATCAAGCCATGATTCTGAGAGTTTGGTTGTGAACAATGGTGTTACGGGTCTAGAATTGCGGTCTGAGCCTCGGATTCAGTCACCTGATGATGCTGGTGGTGTTGCTTCTGGGACACCCTGCAACAACGGTGCTGCTGGGGAGGTTGCAATAAGGATCATTGGTGCTGGAGAGCATGATCACAATGTGGGGTTAGGTTCGTCTATTCCCTCATCCTCAAGGAGTCAGATTGGAGAAGCGGGGTATGATGGTTGTGATGAGATGATTGGTGATAGAGGGGGAATTGATGATGATGCCGAGGGTCATCGCAATGGAGTTCCGGTCAGCGAGAGGGTGCCTCTGGTGTCTCCAGCTTCTTCTTCGTCTTTGGCTGGTGGTAGTGGGCAGGCTGATGGTGATGTGGGGAATGGTGTAGATAGTAACAATAGGGATTCCTCAAACTACCAGAGATATGACATTCAGCGGATTGCAAAGTGGATTGAGCAGATTCTTCCTTTCTCACTCTTGTTACTGGTTGTTTTCATCCGTCAGCATTTGCAAGGTTTCTTTGTCACAATTTGGATATCAGCTGTGATGTTCAAGTCAAATGAAATTGTTAAGAAGCAGACAGCTTTAAAGGGGGATAGGAAAGTGTCAGTTCTTGTTGGTATATCTATTGCCTTCATGCTTCATGTGATGTTCATTTATTGGTGGTATCGAAATGATGATCTTTTATACCCACTGGTGTTGGTTCCCCCAAAAGCAAATCCTTTCTGGCATGCAATATTCATCATCTTAGTTAATGATGCATTGGTGCGGCAAGCAGCAATGGCCTTCAAGTGTATTCTGTTAATATATTACAAAAGTGGCAGAGGTCATAGCTTCCGTCGGCAGGCTCAAATGTTAACGCTGGTTGAGTACACACTGCTATTGTATCGTGCCTTATTACCAACACCTGTTTGGTACCGGTTTTTCTTAAACAGGGCATACGGCAGTCTCTTTTCATCCCTGACCACAGGGTTATATTTAACTTTCAAGCTAACATCTGTTGTTGAGAAGGTCCAATGCTTTTTATCTGCCTTGAAAGCATTGTCAAGAAAGGAAGTTCATTATGGGGTTAATGCCACAATGGAGCAGGTTAATGCTGCTGGTGACTTATGTGCCATATGCCAGGAGAAAATGCATGCCCCCATATTGTTGCGCTGCAAACACATTTTCTGCGAGGAATGTGTGTCAGAATGGTTTGAGAGAGAAAGGACATGCCCTCTATGCAGAGCACTGGTAAAGCCTGCTGATCTGCGTACCTTCGGAGACGGATCAACGAGTCTCTTTTTCCAGTTGTTCTAG 1548 0.4373 MESLDATISSNSPSSILSSSSGVNNNDNISSVSNDNNVNSNSNGGTVTWYGVRLPSVSPLRSPLSFLLDYSGILRSSHDSESLVVNNGVTGLELRSEPRIQSPDDAGGVASGTPCNNGAAGEVAIRIIGAGEHDHNVGLGSSIPSSSRSQIGEAGYDGCDEMIGDRGGIDDDAEGHRNGVPVSERVPLVSPASSSSLAGGSGQADGDVGNGVDSNNRDSSNYQRYDIQRIAKWIEQILPFSLLLLVVFIRQHLQGFFVTIWISAVMFKSNEIVKKQTALKGDRKVSVLVGISIAFMLHVMFIYWWYRNDDLLYPLVLVPPKANPFWHAIFIILVNDALVRQAAMAFKCILLIYYKSGRGHSFRRQAQMLTLVEYTLLLYRALLPTPVWYRFFLNRAYGSLFSSLTTGLYLTFKLTSVVEKVQCFLSALKALSRKEVHYGVNATMEQVNAAGDLCAICQEKMHAPILLRCKHIFCEECVSEWFERERTCPLCRALVKPADLRTFGDGSTSLFFQLF* 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g1068 515 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 20 515 IPR044235 GO:0061630|GO:1904294
Amo17g1068 515 ProSiteProfiles Zinc finger RING-type profile. 454 492 IPR001841 -
Amo17g1068 515 ProSitePatterns Zinc finger RING-type signature. 469 478 IPR017907 -
Amo17g1068 515 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 429 502 IPR013083 -
Amo17g1068 515 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 20 515 - -
Amo17g1068 515 CDD RING-HC_RNFT1_like 453 492 - -
Amo17g1068 515 MobiDBLite consensus disorder prediction 166 185 - -
Amo17g1068 515 Pfam Zinc finger, C3HC4 type (RING finger) 452 495 - -
Amo17g1068 515 SUPERFAMILY RING/U-box 445 497 - -
Amo17g1068 515 MobiDBLite consensus disorder prediction 190 217 - -
Amo17g1068 515 SMART ring_2 454 491 IPR001841 -
Amo17g1068 515 MobiDBLite consensus disorder prediction 1 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g1068 Amo-Chr17 28263042 28275764 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g1068 60 515 C3H Transcription Factor Family AT5G01960 61.171 0.0 550
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g1068 - K22379 nnu:104612968 599.356