Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g1052 ATGCCTGCAATTGCTGATCCTAACACCCACAAGCGCAAGTTAAGATCTCACGCGCCGCCACGCGCCGAATCTCCTTCCCCTTCCCCACCGAAATGGAAGTCGCCCCGCCCATCTGCTATTGCCAGCCCCCATTCTGCTGCAAATGGTAATGAAATTGTTGCTGATGAAAATCAAGGTGTATTGCGGAAACCTGACCTTGTGAAATCCCTTTGGAATCTGAAAGATGGTGAGCAATTGAGAGTGGTGAAGGAGGCATTGCACCTTGCAACTGCACCTTCTGCGGTTGTGTGTCGAGAAGAGGAGCAGGATATGGTTTTGGGGTTCTGCAAATCCTGCATTGAGCATGAGAAGGCTGGGAGCTTGTACATATGCGGGTGCCCTGGAACTGGAAAATCGTTGTCTATGGAGAAAGTGAAAGAGGCTTTACTCAATTGGGCAAAAGAGGGAGGTTTTCCACTGCCAGATGTTTTGTCAGTAAATTGTACATCCCTTGCCAATACATCAGATATTTTCACCAAGATACTTGGGTTAAGCCCTTCACGGGGAAGAAGGGTTTTGGCAACACCCTTGCAACAACTTCAGAACATGTATTCACAGAAATCTTCTACCAGGAATATGATGTTGATAGTTGCTGATGAGTTAGATTACCTAATAACCAGAGACCGGGCTGTGCTCCATGACCTTTTTATGCTTACCACCTTCCCATTTGCCAGATGTATATTAATAGGGGTAGCAAATGCTATTGACCTAGCTGATCGATTTCTTCCAAGGCTTACATCTCTAAATTGCAAGCCTACTGTTGTAACTTTTCGTGCCTACTCTAAAGATCAAATCCTTAGGATTCTTGAAGAAAGGCTAAATGAACTTCCTTACACTGTCTTTCAACGTCAAGCACTAGAACTATGTGCTAGGAAAGTTGCTGCAGCTTCTGGGGATATGCGGAAAGCTCTTTGCATTTGTAGGAGTGCGATAGAGATGCTAGAAGCTGAAGTTAGAGAATCTGTATGCAATTTGAATACTCCATTGGAAGAGAAATCATCCTCTGAACAAAATATGGCTACAGTTTCTGATCCCATGAAGAAACAAGAATTTGATATTGTAAGGATTGATCATATGGCTCGTGCTTTGTCAAAGACATATAGATCACCAGTGGTGGATACTATACAATCTTTGCCACATCATCAACAGATTATACTTTGCTCGTCCATGAAACATTTCTGTGGATCTAAGAAAGATACAATCCTTGGAGAGCTGTATAAATCTTACTCTGAGTTATGCAAATCATCATTGATTCCCCCAACAGGAATCTTGGAATTCTCAAACATGTGCAGAGTGCTTAATGACCAGGGGCTCATTAAACTAGGACCATCACGAGAGGATAAATTGAAAAGGGTAACACCAAAAGTTGACGAGGCTGATATTACATTTGCATTGCAGATTATTTCATTATATATGAAATTGCTTGGAAGTTGGGAAGAATTTTCAGCTGACAAGCAACAGTTGTGA 1506 0.425 MPAIADPNTHKRKLRSHAPPRAESPSPSPPKWKSPRPSAIASPHSAANGNEIVADENQGVLRKPDLVKSLWNLKDGEQLRVVKEALHLATAPSAVVCREEEQDMVLGFCKSCIEHEKAGSLYICGCPGTGKSLSMEKVKEALLNWAKEGGFPLPDVLSVNCTSLANTSDIFTKILGLSPSRGRRVLATPLQQLQNMYSQKSSTRNMMLIVADELDYLITRDRAVLHDLFMLTTFPFARCILIGVANAIDLADRFLPRLTSLNCKPTVVTFRAYSKDQILRILEERLNELPYTVFQRQALELCARKVAAASGDMRKALCICRSAIEMLEAEVRESVCNLNTPLEEKSSSEQNMATVSDPMKKQEFDIVRIDHMARALSKTYRSPVVDTIQSLPHHQQIILCSSMKHFCGSKKDTILGELYKSYSELCKSSLIPPTGILEFSNMCRVLNDQGLIKLGPSREDKLKRVTPKVDEADITFALQIISLYMKLLGSWEEFSADKQQL* 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g1052 501 Gene3D - 268 360 - -
Amo17g1052 501 CDD AAA 101 259 - -
Amo17g1052 501 CDD Cdc6_C 392 474 IPR015163 -
Amo17g1052 501 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 22 488 - -
Amo17g1052 501 PIRSF Cdc6 3 490 IPR016314 GO:0006270|GO:0051301
Amo17g1052 501 Gene3D - 384 476 IPR036388 -
Amo17g1052 501 MobiDBLite consensus disorder prediction 1 45 - -
Amo17g1052 501 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 85 335 IPR027417 -
Amo17g1052 501 PANTHER CELL DIVISION CONTROL PROTEIN 6 HOMOLOG 22 488 - -
Amo17g1052 501 Gene3D - 76 267 IPR027417 -
Amo17g1052 501 SUPERFAMILY "Winged helix" DNA-binding domain 384 483 IPR036390 -
Amo17g1052 501 Pfam AAA lid domain 295 329 IPR041083 -
Amo17g1052 501 Pfam CDC6, C terminal winged helix domain 399 477 IPR015163 -
Amo17g1052 501 SMART Cdc6_C_2 399 478 IPR015163 -
Amo17g1052 501 Pfam AAA domain 116 233 IPR003593 -
Amo17g1052 501 MobiDBLite consensus disorder prediction 22 36 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g1052 Amo-Chr17 27886275 27891721 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g1052 28 488 Core DNA Replication Machinery Family AT2G29680 60.213 0.0 548
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g1052 K02213 - gmx:100791200 713.375