Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g1033 ATGGTAAGTGGTGGTGGCTGTATTAGGCCTCAAGAGGATTCACTTAATAACCCCATTGATATGGTAGTTGGTACCCCTGGAAGGATTCTTCAACATATTGAGGAGGGCATCCTAGTGTATGGCGACATCAAATACTTGGTCTTGGATGAGGCAGATACAATGTTTGATCATGGCTTTGGTCCTGATATACGCAAATTTCTGGCCCCATTGAAACATCGTGCATCAAAGTCTGATGGCCTAGGTTTTCTGACCGTCTTGGTAACCGCAACAATGACAAAGGCTGTGCAAAAGCTAATTGATGAGGAGTTTCAGGGCATTGTACATCTGCGAATATCAACATTGCATAAAAAGATTTCTTCTGCTCGTCACGATTTTATTAAACTTTCAGGTTCTGAGAACAAGCTGGAAGCATTACTTCAGGTACTTGTGCCAAGCCGAGCAAAAGGCAACAAGGTGATGGTTTTTTTGCAATACTTTGGACTCTAA 486 0.4239 MVSGGGCIRPQEDSLNNPIDMVVGTPGRILQHIEEGILVYGDIKYLVLDEADTMFDHGFGPDIRKFLAPLKHRASKSDGLGFLTVLVTATMTKAVQKLIDEEFQGIVHLRISTLHKKISSARHDFIKLSGSENKLEALLQVLVPSRAKGNKVMVFLQYFGL* 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g1033 161 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 1 156 - -
Amo17g1033 161 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 39 1 156 - -
Amo17g1033 161 Pfam DEAD/DEAH box helicase 4 98 IPR011545 GO:0003676|GO:0005524
Amo17g1033 161 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 107 IPR027417 -
Amo17g1033 161 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 109 IPR014001 -
Amo17g1033 161 Gene3D - 1 111 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g1033 Amo-Chr17 27014583 27015866 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g1033 4 69 Eukaryotic Initiation Factors Gene Family AT3G13920 39.130 2.80e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g1033 - - ahf:112766979 307.76