Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g1030 ATGGATCCCTCATGCTATAATATTTTCTGCATAATTTTGTTGCTCAATCTTCTAGCAGCTATAGTTCCATACAGATTTGCTGTTTCTTCTTATGCTAGTGATGTTCCAATCAATGTTACCAAACACTTTTTCTTCCCAAATTTCAACTTGAACAACAACCCTAGATTAGTCCATGAAGTGAAGCTTCTAGGCAGTGCCAAATTCTCAGATGAAAATGGTGCAATTCAGATCCCAATTGAGTCCCAAGACACTGACATAAGGCACCAAGCAGGTAGAGGAATCTACAACTTCCCAATTCGCCTTCTAGATCCAAGAACACAAACTCCGGCGTCTTTCGAAACCACCTTCGCTTTTCAGCTCAACAATTCAACATCCGCTGATGAATCCTCCAATGGAGGAAGTGGTTTAACTTTCATAATTGTTCCTGATGAGTTCACAGTTGGAAGATCTGGTCCATGGCTTGCAATGCTCAATGATGTTTGTGAGAATGACTACAAGGCAGTTGCAGTTGAATTTGACACAAGGAAGAACCCTGAATTTCGTGATCCAAATGATAACCATATTGGTATCAATTTAGGTACCATAGTATCTACAAAAACTATAAATGCTTCTGATGCTGGTGTTTCTCTTAAGGATGGTTCTGTTCATAGGGCTTGGATCAAATATGATGGTCAACAAAGGAGGATGGATATTCATCTCGGCCTCGCCGACCAATTTGTTTATCCATCCAAGCCAATCTTCTCAGAGTCCATTAATCTTACTCCTTATCTGAATGAGTACATGTTTGTAGGGTTCTCAGCTTCCACAGGTAACCATACTCAAATCCATAATATACTCTCTTGGAATTTCACTTCAACTAGCCAAGCTTTCCTCCGATTACCATCATCCGAAACTTGCCAGGGCCAGATCTTGCTTCAGAATAATACTGGAGCTGCAGAAGAAGCTACCACAAAGTCTTCAAAGGACGAACCTTCTAAAAGCTTCTTGATTTTCGTGGCTGTGGTCGTGATTGTTCTCGTTTTTCTGATTGGTTTCTACTTTGTAAGCAAGCACAGAAGAAACGCTGCCAAATCAAAAAGTCCAATGGATGTAGAGATTCACAGGCCAAGGCCTCCAAACAAGCCTCGCCGCTTCACCTTCTCTGAGCTTTCGTCCGCAACTCGGTCTTACAGTGAAATTGAGTTGCTTGGAAATGATTCCAGAGGAGTGTACTACAGAGGGAAGCTTTCTAATGGTACACAGGTTGCTGTGAAGAGATTCTCGGAGCAGTTCCTTGGCACACACGGATCTGATAAGAAGCGTTTGTTAAAGGAAATCAAGACAATCAGCGCAGTTCGCCACCCGAATTTGCTTCCCCTTAGAGGCTGGTGCCAGGACAATCATCAAGTCATGGTGGTTTATGACTTTGTCCCCAATGGCAGCCTAGATAAATGGCTATTTGGGGCCGGCGTTCTTCCGTGGACGCGAAGATTCAAAGTCATAAAGGATGTAGCTGATGGCTTGAGTTTCCTCCACGGCAAGCAACTAGCCCACAAGAACTTGAAATGCAGCAGTGTGTTCCTTGATGTCAGCTTCAGAGCCGTGTTGGGGGACTTTGGATTCGTCCTAATGGGGGCCGAATCAAAACAATTCGAGGCTCAAGTGTGCCACGGCGCAGACGTGTTTGAATTCGGAGTCCTTGTGTTGGAAGTAATAGCAGGAAGGAAAAGGAATGAGAGTGATGAAGGGAAGCCTGAGGAGAAGAATTTGTTGGATTTTGCTTGGAACTTGCATGAGATTGATGAGAAAGTGAAGATTGTAGATAGAAAGATGGGATCATTGATAAACTTGGAGCAAGCAATTAGAGTTCTTGAAATTGGTTTGCTTTGCACTTTGAATGAGAACAAAGGGAGACCCTCAATGGAGCAAGTTGTGGAGTTTCTTGGTAACATGGAGAAGCCTATTCCTGAGCTTCCAAGAACTCGCCCTGTTGCCTTGTTTCCTTATAGTAGTGCCAATACTGGACTTTGCAATGCTTATTCTTGTACCTTTTAG 2034 0.4317 MDPSCYNIFCIILLLNLLAAIVPYRFAVSSYASDVPINVTKHFFFPNFNLNNNPRLVHEVKLLGSAKFSDENGAIQIPIESQDTDIRHQAGRGIYNFPIRLLDPRTQTPASFETTFAFQLNNSTSADESSNGGSGLTFIIVPDEFTVGRSGPWLAMLNDVCENDYKAVAVEFDTRKNPEFRDPNDNHIGINLGTIVSTKTINASDAGVSLKDGSVHRAWIKYDGQQRRMDIHLGLADQFVYPSKPIFSESINLTPYLNEYMFVGFSASTGNHTQIHNILSWNFTSTSQAFLRLPSSETCQGQILLQNNTGAAEEATTKSSKDEPSKSFLIFVAVVVIVLVFLIGFYFVSKHRRNAAKSKSPMDVEIHRPRPPNKPRRFTFSELSSATRSYSEIELLGNDSRGVYYRGKLSNGTQVAVKRFSEQFLGTHGSDKKRLLKEIKTISAVRHPNLLPLRGWCQDNHQVMVVYDFVPNGSLDKWLFGAGVLPWTRRFKVIKDVADGLSFLHGKQLAHKNLKCSSVFLDVSFRAVLGDFGFVLMGAESKQFEAQVCHGADVFEFGVLVLEVIAGRKRNESDEGKPEEKNLLDFAWNLHEIDEKVKIVDRKMGSLINLEQAIRVLEIGLLCTLNENKGRPSMEQVVEFLGNMEKPIPELPRTRPVALFPYSSANTGLCNAYSCTF* 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g1030 677 Pfam Legume lectin domain 42 289 IPR001220 GO:0030246
Amo17g1030 677 Pfam Protein tyrosine and serine/threonine kinase 395 535 IPR001245 GO:0004672|GO:0006468
Amo17g1030 677 Gene3D - 40 286 - -
Amo17g1030 677 ProSitePatterns Legume lectins beta-chain signature. 168 174 IPR019825 -
Amo17g1030 677 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE VIII.2-LIKE 13 659 - -
Amo17g1030 677 SUPERFAMILY Concanavalin A-like lectins/glucanases 42 287 IPR013320 -
Amo17g1030 677 CDD lectin_legume_LecRK_Arcelin_ConA 62 286 IPR001220 GO:0030246
Amo17g1030 677 ProSiteProfiles Protein kinase domain profile. 390 677 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo17g1030 677 PANTHER - 13 659 - -
Amo17g1030 677 Gene3D Phosphorylase Kinase; domain 1 362 469 - -
Amo17g1030 677 SUPERFAMILY Protein kinase-like (PK-like) 372 654 IPR011009 -
Amo17g1030 677 Gene3D Transferase(Phosphotransferase) domain 1 470 650 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g1030 Amo-Chr17 26928524 26931269 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g1030 28 660 Receptor kinase-like Gene Family AT5G55830 30.074 5.06e-92 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Amo17g1030 Lectin_legB 8.5e-56 CL0004
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g1030 - - gmx:100807767 1079.7