Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g1016 ATGAAGAAATCACCTTCAAGCAGCATCAATAAAAGTTTGCATAATCAATATAGCCAAAGAAAAGAGAATGATCGTTCTTTCTTGAAATCTTTCAAGTCTGCTTTCAGAGCTGTTTTTGCATTGTTCCTCTCCGGAAGCAAAAGAAAGACACCCTCAAAAGTTGATGAAAGAAACAACATATCAAAAGTCAGAGGAGTATCATCTTCAATTGACTCATCCAAAAGTTCATCAAAATGGAAATTTTCTAACTCCTATGCATCATCATCTAGAACTGCAAGTGGGCAACTTGAGATTGGAAACTTCACCTTTGAAGAAATCTACAAGTCAACGTCAAGATTCTCCCCGGAGAATCAGATAGGAGAAGGTGGATTTGGAACAGTTTACAAAGGTAAGCTTAACGACGGAACTCTTGTTGCCGTGAAGCGCGCCAAGAAGGACGGACCGAAACACTTGTACGAGTTCAAGAATGAAATATACACCTTGTCAAAGATTGAGCATCGGAATCTTGTGCGGCTATATGGATATTTGGAGCTTGCAGAAGAGAAGATTATTGTTGTTGAGTATGTTGGTAATGGGACCCTTCGCGATCATCTAGATGGTACTCAAGGGGATGGACTAGAAATTGCTGAGCGTCTAGACGTAGCAATTGATGTGGCTCACGCAATCACTTACCTTCACATGTACACAGATAATCCAATTATTCATAGAGACATAAAAGCATCAAACATTCTAATCACAGAGAACTTAAGGGCCAAAGTGGCAGACTTTGGTTTTGCACGCTTGTCTGATGACCCTTCAGCAACTCATATTTCAACTCAAGTTAAAGGAACTGCTGGCTACATGGATCCTGAGTACCTAAGAACATACCAACTCACTGATAAGAGTGACGTTTATTCGTTCGGTGTTTTGCTTGTCGAAATGATGACAGGACGGCATCCCATCGAGCCCAACAGACCCCTCCAAGAGAGAGTTACAATCAGATGGGCAATGAAGATGCTGAAACAAGGGGATGCTGTGTTTGCAATGGACCCGAGAATGCGAAGAAGCCCGGCCTCTAACAAGGCAGTGAAGAAGGTTCTAAAACTAGCCTTCCAATGCCTTGCACCTTCGCGGGAATTGCGGCCATCAATGAAGAGTTGTGCAGAGGTTCTATGGGGAATCAGGAAAAGCTTTAGAGATGAAGCCACTTCTAATGTTCCTCCTCTTCCTTCTCACCAATCTGAAAATTTTCCTCAAAGAGGAAAGAATTTGCAAACGGTATTTGGTATTGAGGATGATGAGAGCAATAAATTTGCTTCTGCACCTAACCAAATTCATTCATAA 1323 0.4172 MKKSPSSSINKSLHNQYSQRKENDRSFLKSFKSAFRAVFALFLSGSKRKTPSKVDERNNISKVRGVSSSIDSSKSSSKWKFSNSYASSSRTASGQLEIGNFTFEEIYKSTSRFSPENQIGEGGFGTVYKGKLNDGTLVAVKRAKKDGPKHLYEFKNEIYTLSKIEHRNLVRLYGYLELAEEKIIVVEYVGNGTLRDHLDGTQGDGLEIAERLDVAIDVAHAITYLHMYTDNPIIHRDIKASNILITENLRAKVADFGFARLSDDPSATHISTQVKGTAGYMDPEYLRTYQLTDKSDVYSFGVLLVEMMTGRHPIEPNRPLQERVTIRWAMKMLKQGDAVFAMDPRMRRSPASNKAVKKVLKLAFQCLAPSRELRPSMKSCAEVLWGIRKSFRDEATSNVPPLPSHQSENFPQRGKNLQTVFGIEDDESNKFASAPNQIHS* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g1016 440 ProSitePatterns Serine/Threonine protein kinases active-site signature. 233 245 IPR008271 GO:0004672|GO:0006468
Amo17g1016 440 PANTHER RECEPTOR-LIKE PROTEIN 55 14 411 - -
Amo17g1016 440 ProSitePatterns Protein kinases ATP-binding region signature. 119 145 IPR017441 GO:0005524
Amo17g1016 440 Pfam Protein tyrosine and serine/threonine kinase 116 384 IPR001245 GO:0004672|GO:0006468
Amo17g1016 440 MobiDBLite consensus disorder prediction 1 23 - -
Amo17g1016 440 SMART serkin_6 113 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo17g1016 440 Gene3D Transferase(Phosphotransferase) domain 1 189 401 - -
Amo17g1016 440 Gene3D Phosphorylase Kinase; domain 1 72 188 - -
Amo17g1016 440 CDD STKc_IRAK 119 384 - -
Amo17g1016 440 MobiDBLite consensus disorder prediction 1 16 - -
Amo17g1016 440 ProSiteProfiles Protein kinase domain profile. 113 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo17g1016 440 SUPERFAMILY Protein kinase-like (PK-like) 89 387 IPR011009 -
Amo17g1016 440 PANTHER CALMODULIN-BINDING RECEPTOR-LIKE CYTOPLASMIC KINASE 1 14 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g1016 Amo-Chr17 26541250 26545278 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g1016 84 377 Receptor kinase-like Gene Family AT1G79620 42.667 8.29e-74 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IV Amo17g1016 PK_Tyr_Ser-Thr 2e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g1016 - - gmx:100811511 617.461
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g1016 17 26541250 26545278 Amo01g0705 01 10098549 10101874 PCT