Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g1001 ATGAGGAACCGCCGCTACATTTTCCCGCAAGGGACCTCTGATCGTGTATGGAACCGAAGGCGCGAAGGCCGTCGCAAATGTGGAGAGGCTGAACCTTCGGAAGCTCGCTCCCGGTGGCCACCTCGGCAGGTTGTGATTTGGACCAAGTCAGCATTCGAGAAACTCGATTCGATCTATGGAACCTTCCAGAAGGCATCAGAGAAGAAGAAGGGTTACATTCTTCCAAGGTCAAAGATGGTGAATGCTGACCTGGCTAGGATTATTAACTCTGATGAGGTTCAGTCTGTTGTGAGGCCCATTAAGAAGGAGATTAAGAGGGCCACTCTCAAGAATAACCCTCTCAAGAACTTGAATGTGATGCTGAGGTTGAATCCTTATGCTAGTTGCTAA 390 0.4923 MRNRRYIFPQGTSDRVWNRRREGRRKCGEAEPSEARSRWPPRQVVIWTKSAFEKLDSIYGTFQKASEKKKGYILPRSKMVNADLARIINSDEVQSVVRPIKKEIKRATLKNNPLKNLNVMLRLNPYASC* 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g1001 129 PANTHER BNAC03G35890D PROTEIN 44 127 - -
Amo17g1001 129 Pfam 60S ribosomal protein L4 C-terminal domain 70 128 IPR025755 -
Amo17g1001 129 PANTHER 60S RIBOSOMAL PROTEIN L4 44 127 IPR045240 -
Amo17g1001 129 Gene3D - 35 98 IPR023574 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g1001 Amo-Chr17 26116963 26117385 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g1001 45 127 Cytoplasmic Ribosomal Protein Gene Family AT3G09630 84.337 8.53e-45 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g1001 K02930 - egt:105952891 154.836