Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g0997 ATGGGTTATTTATGTGACTTTTGTGGAGAGCAAAGGTCCTTGGTATACTGCCGCTCAGATGCTGCATCCTTATGTTTGTCGTGCGATCGGAATGTTCATTCTGCTAATGCCCTTTCTAAGCGCCATTCCAGGACCCTTGTATGTGAGAGATGTAACTCACAACCTGCTTTTATAAGATGTGCTGAGGAGAAAATTTCACTCTGTCAGAACTGTGACTGGCTTGGTCATGGTACCACTCCGTCTACTTCGGGGCATAAGAGGCAAACAATCAATTTATATTCTGGCTGCCCTTCAGCTGCAGAATTTTCTTCAATATGGTCCTTTTTCTCAGATATACCTGCCATGGGTGAAACATGTGAGCAGGAACTTGGTTTAATGAGCATTAGTGAGAACAGTGAAAAGAGTGCTTGGGTTCCTCCAGAAAACCAGAATGCTTCTAGTTCTGCTCAAGTGACCAATCTACCCGGCAAGGATAAATCTTGGGTTGGCACATCTTCAATGCCTGAGTCAAGCTCAGAACCTCGTATCATGGACCAGCCACCTGGACCTTCCAATGCATGCGTGCCTAAGTTATATTGTCCTGTGAAAACAACTCCTGCACTCTGTGAAGATGATGATAATCTATATGATGATTTCAACATGGATGAAGTGGATCTGGATCTTGAGAACTATGAGGAACTTTTTGGTGTGGCTCTCAGTCATTCTGAAGAGCTTTTTGAAAATGGTGGAATTGATAGCTTATTTGGGACAAAGGAAATGTCTGCCAGTGCTGGGGACTCCAATTGTCAGGGCGCGGTTGCTGCTGAGGGCTCAACTGGATTAATCAATGCAACACAACCAGCATGCAGCAATGCTGCATCTGCAGATTCAATGATGAGCACTAAAACTGAACCAATTATTTGTTTTACTGGAAGGCAATCCCAATCGAACATTTCTTTTTCTGGTGCAACTAAAGATGGTGGTGGTGGTGGTGGTGGTGACTATCAAGACTGTGGGGCTTCTTCAATGCTTCTCATGGGAGAACCTCCCTGGTGTCCTCCTTGCCCCGAGAGCTCTATGCAATCTGCTAATCGCAGCAACGCTGTCATGCGTTATAAGGAAAAGAAAAAGACACGAAAGTTTGAAAAGCGAGTAAGGTATGCCTCTCGTAAGGCTAGGGCTGATGTCAGAAGGCGCGTGAAGGGCCGGTTTGTCAAAGCCGGTGATATTTATGACTATGACCCGATGAGCCAAACCAGAAGTTACTGA 1248 0.4519 MGYLCDFCGEQRSLVYCRSDAASLCLSCDRNVHSANALSKRHSRTLVCERCNSQPAFIRCAEEKISLCQNCDWLGHGTTPSTSGHKRQTINLYSGCPSAAEFSSIWSFFSDIPAMGETCEQELGLMSISENSEKSAWVPPENQNASSSAQVTNLPGKDKSWVGTSSMPESSSEPRIMDQPPGPSNACVPKLYCPVKTTPALCEDDDNLYDDFNMDEVDLDLENYEELFGVALSHSEELFENGGIDSLFGTKEMSASAGDSNCQGAVAAEGSTGLINATQPACSNAASADSMMSTKTEPIICFTGRQSQSNISFSGATKDGGGGGGGDYQDCGASSMLLMGEPPWCPPCPESSMQSANRSNAVMRYKEKKKTRKFEKRVRYASRKARADVRRRVKGRFVKAGDIYDYDPMSQTRSY* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g0997 415 CDD Bbox1_BBX-like 4 47 - -
Amo17g0997 415 SMART bboxneu5 4 47 IPR000315 GO:0008270
Amo17g0997 415 SMART bboxneu5 48 90 IPR000315 GO:0008270
Amo17g0997 415 ProSiteProfiles CCT domain profile. 358 400 IPR010402 GO:0005515
Amo17g0997 415 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 415 - -
Amo17g0997 415 Pfam CCT motif 358 400 IPR010402 GO:0005515
Amo17g0997 415 MobiDBLite consensus disorder prediction 134 181 - -
Amo17g0997 415 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 9-LIKE 1 415 - -
Amo17g0997 415 CDD Bbox1_BBX-like 47 90 - -
Amo17g0997 415 ProSiteProfiles Zinc finger B-box type profile. 43 90 IPR000315 GO:0008270
Amo17g0997 415 MobiDBLite consensus disorder prediction 134 173 - -
Amo17g0997 415 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g0997 Amo-Chr17 25909077 25914296 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g0997 1 415 C2C2-CO-like Transcription Factor Family AT5G48250 56.000 1.25e-146 419
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Amo17g0997 CCT 6.6e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g0997 - - gmx:100783016 684.485
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g0997 17 25909077 25914296 Amo17g0997 17 25909077 25914296 ECH