Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g0996 ATGGTTAAAGGAGTGTGGTTAGTTGGCCCAAAATGCCAATTATCAGTGTTTGGAAGGTGGTGGGGTTCCTCTATCTATAAAGCAAAGAGAGAAATTCAGAGTTTCATTCATCAAAAACCCAGAAAACCCGTAATCTTCAAAATCCTATCTTCCAACTTGTCAAAGCTGTTTTACCTTCCTCTGTGGTTGAACAAGTTTTCATATCAATTTGGTTCACTCTTTCCATGTTTATTGATCCTTCTTGATTCAGAAACAATCTGTTGTTCTAAATTGGTGTTCGAATCAGCATTGATAAAGAAAATGGGCCTCTCAAGTCTGCCATCGCCATCCGAAGGAGTGCTATGTGCACTTCTTGTTAACACTGTGCTCTCAGTCTCCATATTTAAAGGCATTGTTAGGACAATCCTTCACATTGTTGGCATCCACCTTTCATCATCCTCGGTTTCGCCATCGTCCTCTTCGCCAAATGCCACCTCCCAGAGCCATCAACCATCCGAGTCATTCGAGTTCCTCCTTAGCCCCTCAGAAACATTCATCGAAGAGTTTAGGAGCCGGACGCCTACAATCCGCTTCGACAGCATGTTCTCCTGTGGAAAACCTGAACATGACTGCTGTGTGTGCCTCTCTCAATTTGAGCCGGAATCTGAGATAAACCGCTTGCCCTGCGGCCATCTCTTCCACAAAGTGTGCTTGGAGAAGTGGTTGGATTATTGGAACATCACATGCCCACTTTGCAGGAACCCTTTGATGCCTGAAGACAATGATCCATGGCTCTTAGTAAGCAATGAATGA 792 0.4419 MVKGVWLVGPKCQLSVFGRWWGSSIYKAKREIQSFIHQKPRKPVIFKILSSNLSKLFYLPLWLNKFSYQFGSLFPCLLILLDSETICCSKLVFESALIKKMGLSSLPSPSEGVLCALLVNTVLSVSIFKGIVRTILHIVGIHLSSSSVSPSSSSPNATSQSHQPSESFEFLLSPSETFIEEFRSRTPTIRFDSMFSCGKPEHDCCVCLSQFEPESEINRLPCGHLFHKVCLEKWLDYWNITCPLCRNPLMPEDNDPWLLVSNE* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g0996 263 PANTHER - 101 254 IPR044249 -
Amo17g0996 263 Pfam Ring finger domain 203 246 IPR001841 -
Amo17g0996 263 SMART ringv_2 203 246 IPR011016 GO:0008270
Amo17g0996 263 ProSiteProfiles Zinc finger RING-type profile. 204 246 IPR001841 -
Amo17g0996 263 SMART ring_2 204 245 IPR001841 -
Amo17g0996 263 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 173 251 IPR013083 -
Amo17g0996 263 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XERICO-RELATED 101 254 - -
Amo17g0996 263 SUPERFAMILY RING/U-box 197 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g0996 Amo-Chr17 25894708 25896304 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g0996 101 255 C3H Transcription Factor Family AT2G04240 62.025 6.62e-54 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g0996 K16285 - gmx:100786803 245.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g0996 17 25894708 25896304 Amo17g0996 17 25894708 25896304 ECH