Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g0992 ATGGGCGTGGGAGAGACCACAAAACTCGAACCCGAACCGGAACCCGAACCGAAAGATGTTCACCGCCACCAAGAAGAGGAAGAAGAAGACGACGACGACGTGGAAGAAGAAGAAGAAGGCTTGTCCGACACAAGAACAGCGATAGCATTGGGTCTGTCAGCGAAGGGGAAAGGGCAGAGGCAGAGGCAGCAGCAGCAGGAGTGCGCGGTGGTCCAGCAGGTGTCGGACAAGCTGGTGAGCGGCAGCCTTCAGTGGAAGATAGAGGCAGCCAGAGAGATCCGTAAGCTCGTCAGGAAATCGCCTTCGTCCTCTAAGACGAGGTCCAGGCTGGGCGCGGCTGGAGTGGTCCAGCCTCTCGTCTTCATGCTGTCGTCATCCAACCCCGATGCCCGTCACTCCTCCCTCCTCGCTCTCCTCAACCTCGCCGTCCGCAACGAACGAAACAAGGTCAAAATAGTGACAGCTGGTGCTATCCCTCCTCTGGTGGAGCTCCTCAAAACGCAAAATAGTAGTATAAGGGAATTAGCGACAGCGGCAATCTTGTCACTCTCAGCTGCAGCTCCCAATAAGCCCATAATTGTTGCTTCTGGAGCTGCGCCTCTGCTTGTTCAGATCCTCAACTCTGGAAGTGTTCAAGGCAGAGTTGATGCCGTTACAGCCCTCTATAATCTCTCCACCATCATCGAGAAGAATTCTACTGAACTCCTTAATGCTAGTGCTGTTTCTCCTCTCATCAACCTCCTTAAAGAGTGCAAGAAATACTCCAAGTTTGCCGAGAAAGCTACGGCGCTACTCGAGATTCTCTCCAACTTTGAAGAGGGACGAACCGCAATCTCAGTTGCAGACGGCGGGATTTTAACCTTAGTAGAGACAGTTGAAGATGGATCACTAGTCAGCACACAACATGCTGTTGGAGCTCTGCTGTCATTGTGTCTAAGCTGCCGAGACAAATACCGGGAACTTATCCTCAAAGAAGGAGCAATCCCAGGTTTGTTACGCCTTACAGTGGAGGGCACATCAGAAGCGCAAGATAGAGCACGTGTGCTTCTGGATTTGCTTAGAGATTCTCCCCCGGAAAGAAGACTAGCCTCCTCGGTTTTGGAGAAAATTGTTTATGACATCGCTGAACGCGTAGATGGAGCAGACAAAGCTGCTGAAACAGCTAAAAGGTTATTACAAGACATGGTTCAGAGGAGTATGGAACAAAGCTTGAACTGCATTCAGCATAGAGCAGCATCTTGTAATCCTTCTGTGATTCCTTCCACTTGA 1269 0.5091 MGVGETTKLEPEPEPEPKDVHRHQEEEEEDDDDVEEEEEGLSDTRTAIALGLSAKGKGQRQRQQQQECAVVQQVSDKLVSGSLQWKIEAAREIRKLVRKSPSSSKTRSRLGAAGVVQPLVFMLSSSNPDARHSSLLALLNLAVRNERNKVKIVTAGAIPPLVELLKTQNSSIRELATAAILSLSAAAPNKPIIVASGAAPLLVQILNSGSVQGRVDAVTALYNLSTIIEKNSTELLNASAVSPLINLLKECKKYSKFAEKATALLEILSNFEEGRTAISVADGGILTLVETVEDGSLVSTQHAVGALLSLCLSCRDKYRELILKEGAIPGLLRLTVEGTSEAQDRARVLLDLLRDSPPERRLASSVLEKIVYDIAERVDGADKAAETAKRLLQDMVQRSMEQSLNCIQHRAASCNPSVIPST* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g0992 422 SMART arm_5 228 270 IPR000225 GO:0005515
Amo17g0992 422 SMART arm_5 103 143 IPR000225 GO:0005515
Amo17g0992 422 SMART arm_5 186 226 IPR000225 GO:0005515
Amo17g0992 422 SMART arm_5 271 312 IPR000225 GO:0005515
Amo17g0992 422 SMART arm_5 144 185 IPR000225 GO:0005515
Amo17g0992 422 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 58 387 - -
Amo17g0992 422 Pfam Armadillo/beta-catenin-like repeat 145 184 IPR000225 GO:0005515
Amo17g0992 422 Pfam Armadillo/beta-catenin-like repeat 188 225 IPR000225 GO:0005515
Amo17g0992 422 Gene3D - 194 405 IPR011989 -
Amo17g0992 422 PANTHER U BOX DOMAIN-CONTAINING 58 387 - -
Amo17g0992 422 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 239 283 IPR000225 GO:0005515
Amo17g0992 422 MobiDBLite consensus disorder prediction 1 46 - -
Amo17g0992 422 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 114 156 IPR000225 GO:0005515
Amo17g0992 422 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 156 198 IPR000225 GO:0005515
Amo17g0992 422 SUPERFAMILY ARM repeat 72 407 IPR016024 -
Amo17g0992 422 MobiDBLite consensus disorder prediction 9 25 - -
Amo17g0992 422 MobiDBLite consensus disorder prediction 26 40 - -
Amo17g0992 422 Gene3D - 71 193 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g0992 Amo-Chr17 25666705 25669823 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g0992 76 360 U-box Gene Family AT3G54790 40.210 1.88e-40 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g0992 K08332 - gmx:100782472 530.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g0992 17 25666705 25669823 Amo17g0992 17 25666705 25669823 ECH