Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g0977 ATGAAGTGGGAAATGGAAATATTGTCTCCAACTACAACACCTTATAATCCAAATTCCAACCTCAGCAACACCAACAACACCTTCAATTGGCTTCTTGGAGATGGAAGGAGCACAAGATGGACACCCGAAGAGAACAAGCTCTTCGAAAATGCGCTGGCCGTTCACGACAAGGACACGCCGGACCGGTGGCACCAGGTGGCTGCAATGATACCTGGGAAGACAGTTGGAGATGTTATCAAGCAATACAAGGAATTAGAAGTTGATGTGTGTAACATTGAGGCTGGTTTGATCCCGGTTCCGGGGTATAGTACTACTTCACCATTTACCTTAGAATGGGTGAATTCTCAAGGGTATGATGATGGATTTAAAGGACTAAGTGGAAAGAGACCTTCTTCTTGCTCAGTGAAGCCACCTGAGCAAGAAAGGAAGAAAGGAGTGCCATGGACTGAAGAAGAACATAAATTGTTCTTGCTTGGTTTGAAGAAGTATGGGAAAGGTGACTGGAGAAACATTTCGCGAAATTTCGTGATAACAAGAACACCAACACAGGTTGCAAGCCATGCTCAGAAGTACTTCATAAGGCAACTTTCCGGAGGCAAAGACAAAAGGAGAGCAAGCATCCATGACATAACAACAGTTAATGTCACTGAAACCGGAACATCTTCTTCAGAAGACACCAAAAGTTCGATGATGCTCTCACAGCAGCAGCAGCAACAAAATTCTAGTTCTGCTGCAACTATACCAAGAACTCATCATTTTCAGTGGAATAATCAACAACCAAATAATGCAGCAGGAGGAGTAGCTATGGAAAAAGTTTTCAATTCTCCTTATGGTGTTAACTCATTTGGGGTTACAATAATGGAAGGGCAAAATCTGAACAAGAGTGTTGAATCTTCTTCATCTTCTTCTTACTTAGGACCTCAGACACAGAACCTGGTTTTTCAAATGCAACAACAATCCTCACAACAACAACAACACTATTCCCATGCATAA 993 0.424 MKWEMEILSPTTTPYNPNSNLSNTNNTFNWLLGDGRSTRWTPEENKLFENALAVHDKDTPDRWHQVAAMIPGKTVGDVIKQYKELEVDVCNIEAGLIPVPGYSTTSPFTLEWVNSQGYDDGFKGLSGKRPSSCSVKPPEQERKKGVPWTEEEHKLFLLGLKKYGKGDWRNISRNFVITRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITTVNVTETGTSSSEDTKSSMMLSQQQQQQNSSSAATIPRTHHFQWNNQQPNNAAGGVAMEKVFNSPYGVNSFGVTIMEGQNLNKSVESSSSSSYLGPQTQNLVFQMQQQSSQQQQHYSHA* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g0977 330 MobiDBLite consensus disorder prediction 127 147 - -
Amo17g0977 330 ProSiteProfiles SANT domain profile. 148 196 IPR017884 -
Amo17g0977 330 SMART sant 144 194 IPR001005 -
Amo17g0977 330 SMART sant 36 88 IPR001005 -
Amo17g0977 330 SUPERFAMILY Homeodomain-like 38 92 IPR009057 -
Amo17g0977 330 ProSiteProfiles Myb-like domain profile. 140 192 IPR001005 -
Amo17g0977 330 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 143 195 IPR006447 GO:0003677
Amo17g0977 330 ProSiteProfiles SANT domain profile. 35 90 IPR017884 -
Amo17g0977 330 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 298 IPR043363 -
Amo17g0977 330 MobiDBLite consensus disorder prediction 216 245 - -
Amo17g0977 330 PANTHER MYB TRANSCRIPTION FACTOR MYB51 1 298 - -
Amo17g0977 330 MobiDBLite consensus disorder prediction 296 330 - -
Amo17g0977 330 CDD SANT 39 85 IPR001005 -
Amo17g0977 330 CDD SANT 147 192 IPR001005 -
Amo17g0977 330 Gene3D - 34 99 - -
Amo17g0977 330 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 140 196 IPR017930 -
Amo17g0977 330 Gene3D - 146 196 - -
Amo17g0977 330 SUPERFAMILY Homeodomain-like 141 195 IPR009057 -
Amo17g0977 330 Pfam Myb-like DNA-binding domain 147 192 IPR001005 -
Amo17g0977 330 Pfam Myb-like DNA-binding domain 39 83 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g0977 Amo-Chr17 25160470 25162476 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo17g0977 Myb_DNA-binding 1.7e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g0977 - - gmx:778034 399.053
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g0977 17 25160470 25162476 Amo17g0977 17 25160470 25162476 ECH
Amo17g0977 17 25160470 25162476 Amo11g0214 11 3232991 3235377 ECH
Amo12g2224 12 101548679 101550525 Amo17g0977 17 25160470 25162476 ECH