Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g0974 ATGAGTTCTCCAGGATCATCCTCAACCTCAAGAGTTTCAGTAGAAGAGCAAGCCCCATTGCCAAAGCCGGCTGATCCTGCAGCAAACTTATCGAGCGATGAGATTGCACCACTTTCAGGAAATCCATTCTTTCATGTAGTTCTTTCAAAATCACATGTTCGTCGTAGTTGTCTCATGGGGCCATCAAAGGACTTAGTAGATATACTTCCATCTGCTGAGGTCCCTACTGTTCTTAAGTGTGGAGGTGAGAGCTGGGACATGGTGTATCGTGGACATGCTCCGGGTCGCAAGTTCTTCGATGGAGGCTGGAGAAAATTTGTCAAAGCTAATTGTTTGGTAGAGGGAGATGCTTGTGTTTTCGAGCTCATGGCAAACAGTGATGAGAAAATTGTCTTTGAAGTTCAAATTCTCAGAGGTGATGTCCCCAAAGTGTTTTTTAAAAGGGATAGAATTGGTGAAAGTGAACAGAAGCCAATTGTCATTGACTAG 489 0.4397 MSSPGSSSTSRVSVEEQAPLPKPADPAANLSSDEIAPLSGNPFFHVVLSKSHVRRSCLMGPSKDLVDILPSAEVPTVLKCGGESWDMVYRGHAPGRKFFDGGWRKFVKANCLVEGDACVFELMANSDEKIVFEVQILRGDVPKVFFKRDRIGESEQKPIVID* 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g0974 162 SUPERFAMILY DNA-binding pseudobarrel domain 39 138 IPR015300 -
Amo17g0974 162 CDD B3_DNA 42 138 IPR003340 GO:0003677
Amo17g0974 162 MobiDBLite consensus disorder prediction 1 15 - -
Amo17g0974 162 MobiDBLite consensus disorder prediction 1 31 - -
Amo17g0974 162 Gene3D - 28 140 IPR015300 -
Amo17g0974 162 SMART B3_2 44 140 IPR003340 GO:0003677
Amo17g0974 162 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS04G0386900 13 147 - -
Amo17g0974 162 ProSiteProfiles B3 DNA-binding domain profile. 43 140 IPR003340 GO:0003677
Amo17g0974 162 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 13 147 IPR044837 -
Amo17g0974 162 Pfam B3 DNA binding domain 44 133 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g0974 Amo-Chr17 24947204 24950158 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g0974 41 138 REM Transcription Factor Family AT1G49480 36.634 3.53e-11 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Amo17g0974 B3 5.9e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g0974 - - adu:107474771 315.849